Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H17
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    30   0.22 
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.2  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   8.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.4  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 424 NINYNEAYIIQINIANYPKVVLHLPSAVRINP 329
           N ++    ++++N  N+ K ++H  SA+RI+P
Sbjct: 650 NWHHTSLGVLELNAKNFHKAIVHFQSALRISP 681


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 298 EGKILPVDVLPDLCALQMEDVKPPLDSWLYLFE*YMLHYSLYFKPICIRTFAVVESCV 471
           E   LP+ + P   ++Q+  V  P D+++  FE    H++   +      F+ ++SC+
Sbjct: 118 ESSSLPIILHPKFSSMQVRTVTSPKDAFVSAFEENKFHFAA-TESFFEMAFSKIDSCL 174


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 365 HLWIVGYIYLNNICFIIVYILNL 433
           HL+ +GY Y     F+I + LNL
Sbjct: 497 HLYYIGYFYSFMTAFLIYWGLNL 519


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = -1

Query: 389 KYSQLSKGGFTSSICSAHKSGSTSTGKIFPSIFFSCCHNTDTCSRCYSLSGCFSNLRTSC 210
           ++++L      SS CS   S  +           SCC +           GC S  +TSC
Sbjct: 212 EHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSC 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,513
Number of Sequences: 5004
Number of extensions: 40149
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)