Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H17
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834...    30   0.91 
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    29   1.6  
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    27   6.4  
05_07_0062 + 27423081-27423287,27423372-27423449,27423548-274235...    27   8.5  

>04_04_0204 +
           23582239-23582338,23582866-23583213,23583357-23583472,
           23583565-23584003,23584165-23584203,23584282-23584569,
           23584667-23584806,23585080-23585563,23585828-23586090
          Length = 738

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 359 TSSICSAHKSGSTSTGKIFPSIF-FSCCHNTDTCSRCYSL--SGCFSNLRTSC*CHG 198
           TS +  AHK+G       F + F FS  H+ D  +   S   +GCF+NL+ S   HG
Sbjct: 292 TSVVDDAHKAGLEIYAADFANDFMFSYNHSYDPLAEYLSFIDNGCFTNLKKSKTDHG 348


>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 368 LWIVGYIYLNNICFIIVYILNLFVLGPLR*LNPVYSYNIS 487
           L IVG+++L  + FI+  +L +F L   +     Y YN S
Sbjct: 220 LKIVGFVFLGVVLFIVTVLLVIFCLSKYQERRSRYDYNRS 259


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 30  FLILCCSLSLTINFCDFVNGSVGGLLSKLRDPLP 131
           FL +C  + L +    F+   V GLL+K   PLP
Sbjct: 79  FLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLP 112


>05_07_0062 +
           27423081-27423287,27423372-27423449,27423548-27423597,
           27423714-27423767,27423965-27424017,27424101-27424173,
           27424718-27424767,27424919-27424987,27425183-27425291,
           27425658-27425725,27425982-27426082,27426260-27426412,
           27426503-27426570,27426898-27426943,27427027-27427107
          Length = 419

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 401 YYSNKYSQLSKGGFTSSICSAHKSGSTSTG 312
           YY  ++S+  +GG  SS C  H    + TG
Sbjct: 242 YYPRQFSKQEEGGSVSSWCGWHTDHGSLTG 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,283
Number of Sequences: 37544
Number of extensions: 224315
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)