Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H17
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.25 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 346 QMEDVKPPLDSWLYLFE*YMLHYSLYFKPICIRTFAV 456
           Q  D  P L+ WLY+    + ++S    PI     ++
Sbjct: 297 QESDYYPDLNEWLYILSGCLYYFSTTINPILYNLMSI 333


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 LRNNHSNCNIYYKCQYCDN 283
           L NN++  N  YK  YC+N
Sbjct: 85  LSNNYNYNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 LRNNHSNCNIYYKCQYCDN 283
           L NN++  N  YK  YC+N
Sbjct: 85  LSNNYNYNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 LRNNHSNCNIYYKCQYCDN 283
           L NN++  N  YK  YC+N
Sbjct: 85  LSNNYNYNNNNYKKLYCNN 103


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 194 SNRDISNSF*GLRNNHSNCNIYYKCQYCD 280
           SN  ISN      NN+ N  +YY   Y +
Sbjct: 86  SNNYISNISNYNNNNNYNKKLYYNINYIE 114


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 194 SNRDISNSF*GLRNNHSNCNIYYKCQYCD 280
           SN+ I N+     NN++N  +YY   Y +
Sbjct: 308 SNKTIHNN--NNYNNYNNKKLYYNINYIE 334


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 194 SNRDISNSF*GLRNNHSNCNIYYKCQYCD 280
           SN  ISN      NN+ N  +YY   Y +
Sbjct: 324 SNNYISNISNYNNNNNYNKKLYYNINYIE 352


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 233 NNHSNCNIYYKCQYCDNN 286
           N  ++CNIY      +NN
Sbjct: 370 NRQNSCNIYNASSRMENN 387


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 73  VTSLTGVSVVYLANFVTLYLQLIR 144
           VTS+  +S  +  NFVT+ +Q ++
Sbjct: 299 VTSVRLISSGFFDNFVTVQIQPLK 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,825
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)