Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H14
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    28   0.85 
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   2.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   6.0  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    25   7.9  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 247  IIQAIQKSSV--HLTMTTRLXXXXXXXXXXKETDEIVDIAIKYHKSHPD---VVVGIELS 411
            ++ A++K ++   +   T+            E  E+V++  +Y K +PD   VV  + +S
Sbjct: 803  VVAAVRKHAMKERIAKITKQVQEHVKAINAAEQKEVVNVVTEYFKENPDMSFVVAKVPIS 862

Query: 412  GNPMVGKF 435
             NP    F
Sbjct: 863  ANPKALSF 870


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 473 ASLALSNAGTKSVNFPTIGFPLSSIPTTTS 384
           A  ALS   +  VN+P+   P++ IP T S
Sbjct: 685 AFTALSQLESARVNYPSFRIPMAIIPATIS 714


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 387  CSSWYRAKRESNGRKIHRFRSGI 455
            CS +YR KR++N + + RF + +
Sbjct: 1264 CSYYYRVKRDTNQKSMVRFANTV 1286


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 226 KMKYIDSIIQAIQKSSVHLTMTT 294
           + KY+  +I ++QKS VH  + T
Sbjct: 528 QFKYVYDLIDSLQKSQVHFPVLT 550


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 RFNHSGHTKVFSPSHHDNTTYYLD 311
           RF H  ++ + + +  DNT  YLD
Sbjct: 75  RFTHHSNSLIHASTKEDNTVRYLD 98


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 396 WYRAKRESNGRKIHRFRSGIGEG 464
           WY+AKR S+     R R  I EG
Sbjct: 85  WYKAKRLSHKEVERRRREAISEG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,418
Number of Sequences: 5004
Number of extensions: 40703
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)