Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H14
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128...    52   2e-07
03_06_0680 - 35497868-35497884,35498058-35501961                       29   1.5  
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793...    28   4.5  
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    28   4.5  
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307...    28   4.5  
10_01_0168 - 1883380-1883594,1884572-1888325                           27   6.0  
01_05_0809 - 25422832-25422919,25423887-25424443                       27   7.9  

>07_03_1571 +
           27811510-27811613,27812493-27812563,27812798-27812889,
           27812963-27813022,27813130-27813351,27813450-27813526,
           27813618-27813687,27813793-27813906,27813985-27814051,
           27814259-27814363,27814470-27814594
          Length = 368

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
 Frame = +1

Query: 4   LVDKTDAYFDEFQ-IGSGDTRNLSDCFQVFSIAHALTSTPEALTMATVMTLQEFQDDGCC 180
           L DK D  F++ + +   + R+L +CF++F + H LT+  + +T  T   +++F  +   
Sbjct: 41  LGDKGDIVFEDVKDVIMKNGRSLPECFRLFELYHILTTDHDTVTRITKEVVEDFAMENVV 100

Query: 181 YIELRSTPR--DTPYMDKMKYIDSIIQAIQ 264
           Y+E+R+TP+  +   M K  Y++++I+ ++
Sbjct: 101 YLEIRTTPKNNEAKGMTKRSYMNAVIKGLK 130



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = +1

Query: 391 VVGIELSGNPMVGKFTDFVPALERARLAGL 480
           V+GI+LSGNP+VG++  ++PALE A+  G+
Sbjct: 195 VIGIDLSGNPVVGEWETYLPALEHAKELGI 224


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 168 ILEFLQSHNSSHCQCLRSTGKGMSYTEYLETIRQI 64
           IL  LQ+ N   C CLR   KGM    YL T+R +
Sbjct: 626 ILYHLQTLNLCRCYCLRGLPKGM---RYLTTLRHL 657


>11_04_0306 +
           16176873-16177124,16178155-16179152,16179204-16179339,
           16179448-16179597,16179711-16179891,16181139-16181298,
           16182156-16182378
          Length = 699

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +1

Query: 10  DKTDAYFDEFQIGSGDTRNLSDCFQVFSIAHALTSTPEALTMATVMTLQEFQDDGC--CY 183
           DK   + DE+   +    ++      F   ++  S PE  T+     LQ F++DG    Y
Sbjct: 461 DKGFLHIDEYPPDANQGFDIPSALVTFPEFNSSRSYPEGDTLFVSPLLQTFKEDGVVKSY 520

Query: 184 IELRSTPRDTP 216
            E+   P  TP
Sbjct: 521 TEVLLVPLTTP 531


>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 97  AHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTPRDTP 216
           +H L     +   AT  TL  F+ DG   +E R+T  D P
Sbjct: 347 SHVLMELNSSKHTATRTTLPSFKTDGTSLLERRNTKADQP 386


>06_01_0433 -
           3078576-3078780,3078797-3078951,3079782-3079821,
           3079957-3080009,3080091-3080199,3080324-3080448,
           3081112-3081201,3081280-3081342,3081453-3081544,
           3081641-3081722,3081913-3082086,3082183-3082264,
           3083100-3083224,3083312-3083389,3084047-3084402,
           3085311-3085608
          Length = 708

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 229 FYPYMVYHEGCSLVRYNSIHHLGILAES*Q*PLSMPPEYW 110
           + PY VY +  S++  +++ H G+   S    L +PPE++
Sbjct: 292 YRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWY 331


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 168 ILEFLQSHNSSHCQCLRSTGKGMSYTEYLETIRQIPCVTRSYL 40
           IL  LQ+ N SHC  LR   K M Y   L  +    C    Y+
Sbjct: 622 ILYHLQTLNVSHCIRLRRLPKDMKYMTSLRHLYTNGCKNLEYM 664


>01_05_0809 - 25422832-25422919,25423887-25424443
          Length = 214

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +3

Query: 378 PSRCSS----WYRAKRESNGRKIHRFRSGIG 458
           P RC+S    W  + ++ +GR+ HR   G+G
Sbjct: 65  PGRCASRGAPWRPSSQQRDGRRHHRHHGGVG 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,438
Number of Sequences: 37544
Number of extensions: 248224
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)