Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H14
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical p...    71   6e-13
Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    29   2.3  
Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical
           protein C44B7.12 protein.
          Length = 388

 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 34/119 (28%), Positives = 61/119 (51%)
 Frame = +1

Query: 64  NLSDCFQVFSIAHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTPRDTPYMDKMKYID 243
           N++  F  F + HA+   PEA+ +A   T++EF++D C Y+ELR++P++T +M    Y+ 
Sbjct: 102 NMTGVFDCFPVIHAILRKPEAIRIAIRQTIKEFEEDNCVYLELRTSPKETDFMTYEDYLQ 161

Query: 244 SIIQAIQKSSVHLTMTTRLXXXXXXXXXXKETDEIVDIAIKYHKSHPDVVVGIELSGNP 420
             I++ + +                     ET   +   I   +   +V+VG+ELSG+P
Sbjct: 162 VCIESFEAAKHEFPRIKTFLIVSLDRRMPFETAAHILGLIGEAQQRTNVIVGVELSGDP 220


>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 331 KETDEIVDIAIKYHKSHPDVVVGI 402
           ++TD  + +  ++HK +PD VVG+
Sbjct: 99  EDTDNFIKLVQEFHKKYPDRVVGV 122


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 331 KETDEIVDIAIKYHKSHPDVVVGI 402
           ++TD  + +  ++HK +PD VVG+
Sbjct: 111 EDTDNFIKLVQEFHKKYPDRVVGV 134


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 331 KETDEIVDIAIKYHKSHPDVVVGI 402
           ++TD  + +  ++HK +PD VVG+
Sbjct: 99  EDTDNFIKLVQEFHKKYPDRVVGV 122


>Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical
           protein T06C12.10 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 334 ETDEIVDIAIKYHKSHPDVVVGIELSGNP--MVGKFTDFVPALERAR 468
           E DE +++     K HP++   I   G P  M  K  + +PA   AR
Sbjct: 146 EEDEAIEVVRSLIKKHPNIEAKILFEGEPVGMNPKVNNMMPAYRAAR 192


>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = +3

Query: 81  PSIQYSSCPYQYSGGIDNGYCYDSARIPR*WMLLYR--TKEHPS*YTIYG*NE---IHRF 245
           P+     C Y Y     NGYCY  +     +++      + +    +I+  NE   I  F
Sbjct: 154 PTTHADDCTYNY-----NGYCYTFSSTAEPFIIAQTKCAETYGDLVSIHSSNENRYIETF 208

Query: 246 NHSGHTKVFSPSHHDNTTYYLDKQKFFY 329
               +  + +    DN+ Y+LDK K+ Y
Sbjct: 209 AAQDYYLIGAVWKLDNSLYWLDKSKWDY 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,960,647
Number of Sequences: 27780
Number of extensions: 217414
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)