Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H13
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   3.5  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   3.5  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   4.7  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   6.1  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   6.1  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    24   8.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   8.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   8.1  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 270 DEHCHVTEIDPKKP 311
           D H HV E+ PK+P
Sbjct: 210 DRHLHVAEVPPKRP 223


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -1

Query: 176 KRYHIIDFFYVAAFLMCQFLWFLRQGPYPYRSVNGTNNHGYY*NFRHHFYLLINMI 9
           KRY  +  + +   L+C+FL F   G   + S+   +  G++ N+R  ++L +  +
Sbjct: 19  KRYDTLHVWKLIKLLICKFLLFHDFGTALFTSLVKASMLGFH-NWRRTYWLYLKKL 73


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 149 YVAAFLMCQFLWFLRQGPYPYRSVNGTNNH 60
           YV   + C + W L + P+  RS   TN++
Sbjct: 338 YVQRLVRCDYTWHLCKSPFK-RSTGNTNDN 366


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 122 FLWFLRQGPYP 90
           FLW LRQG YP
Sbjct: 269 FLWDLRQGQYP 279


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 39  SKILIISMIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYR 212
           S+ L +  +   +N+  +I  LP++ KE  H E   + EI   +P       I  CY+
Sbjct: 190 SRCLTVEELHTLMNSFSFIYKLPEEEKEKVHAE---LDEIAKTIPRVQNTDQIKLCYQ 244


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 293 LCDVAMFVICSDNTTRSVINHASSTGN 213
           LCD A  V+C +N  + V N  +  G+
Sbjct: 44  LCDKAREVLCQENNVQPVRNPVTVCGD 70


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 115 GFLGKAPIHTAALTVQTI 62
           G + +AP+HTAAL V+ +
Sbjct: 336 GLIPQAPMHTAALCVKRV 353


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 271 SFVATTPQEA*SIMLPPQVIL*QCPMGLSSVPNGTTSLIS 152
           SF  TTP+   + +  P  +    P+  SSV N +T + S
Sbjct: 359 SFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITS 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,031
Number of Sequences: 5004
Number of extensions: 38249
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)