Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H11
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   225   5e-60
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    31   0.096
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    31   0.13 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   1.6  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   6.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.3  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    25   8.3  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   8.3  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  225 bits (549), Expect = 5e-60
 Identities = 106/148 (71%), Positives = 129/148 (87%)
 Frame = +3

Query: 3   HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDI 182
           HLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A  VQ++LQ+YKSLQDI
Sbjct: 374 HLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQEYKSLQDI 433

Query: 183 IAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILQG 362
           IAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG  G+LV L++TI+ F +IL+G
Sbjct: 434 IAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEG 493

Query: 363 EYDHLPEVAFYMVGPIEEVIAKADTLAK 446
           ++D LPE AFYMVG I++ + KA+ +A+
Sbjct: 494 KHDSLPESAFYMVGSIDDAVKKAEKIAQ 521


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = +3

Query: 24  LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 191
           + R +    IYP ++ L S SR+M   I       +H +V+  +  +    +    + ++
Sbjct: 357 VDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSV 416

Query: 192 LGMDELSEEDKLTVARARKIQR-FLSQ 269
           +G + LS+ED+L +    K ++ F+SQ
Sbjct: 417 VGEEALSQEDRLALEFLGKFEKTFISQ 443


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 123 YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 269
           +N  R  +++I+Q   S+ +II ++G   LSE DK+T+  A  I+  FL Q
Sbjct: 480 FNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 268 WERNLWILRARATVSLSSSDNSSIPKIAM 182
           W+RN+W   ARA   + S+  SS PK+ +
Sbjct: 209 WKRNVWSGDARAVNIMKSAALSSNPKVML 237


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -3

Query: 463 FTSYAFFARVSAFAMTSSIGPTI*NATSGRWSYSPCRILENPLIVSSSGTSLPACPVNTS 284
           F+    +  +  F +   +G  +  A   +W       L  PLI   +G   PA PVN  
Sbjct: 635 FSGKNTYTGLQYFWLAGVLGTILFWALWKKWPQKWWGQLNGPLIFGGTGYIPPATPVNYL 694

Query: 283 ATWKG 269
           A W G
Sbjct: 695 A-WSG 698


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -3

Query: 364 SPCRILENPLIVSSSGTSLPACPVNTSATWKGWERNLWILRARATVSLSSSDNSSIP 194
           SP   LE   +  S    L     N S+T+    +N  I R     SLSS    S+P
Sbjct: 606 SPNASLEQCFVQRSPSKMLTTLR-NNSSTFPSLRKNAMIARKSTADSLSSPKRQSVP 661


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 WRKLLKDSPKFYRESTTTFQK*HFIWL 402
           W+K  ++SP F      TF K H  W+
Sbjct: 191 WKKSFENSPYFSESYFETFGKMHHGWM 217


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 66  DPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILG 197
           + +D+T +  +P  I  E   V +  Q ++ + + ++DI++ LG
Sbjct: 371 EEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVEDIVSTLG 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,973
Number of Sequences: 5004
Number of extensions: 54473
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)