Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_H08
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 47 1e-05
01_06_0824 - 32243495-32244319,32244449-32244859 44 1e-04
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 37 0.009
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.021
11_02_0012 - 7346282-7347136,7347234-7347593 30 1.1
04_03_0260 - 13580396-13582990 28 4.3
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 28 4.3
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 28 4.3
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 5.7
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 28 5.7
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 28 5.7
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 27 7.5
11_01_0771 + 6453130-6454488 27 10.0
>01_01_1152 + 9170628-9171899
Length = 423
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Frame = +3
Query: 162 KSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN-DNVTKAVFTDLNQKVRSIKGVD 338
++ I+S S LA +A + GE+ ELL + P+ + ++ T L ++R +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 339 LKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN-EEAANIINTWVEDHTNKRIK 515
A V++ G L +FA + + + + +F E+A +N +V D T I+
Sbjct: 119 F--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIR 176
Query: 516 NLVDPSSLDSST 551
+++ P+S+DSST
Sbjct: 177 DVLPPNSVDSST 188
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Frame = +3
Query: 159 DKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN--------DNVTKAVFTDLNQK 314
DK++ +S S+ LA L + GE+ D+++ + +V D +
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 315 VRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNF-GKNEEAANIINTWVE 491
G ++ AN V++ L +A V D + +E + ++F K EEA IN W E
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 492 DHTNKRIKNLVDPSSLDSST 551
T RIK+ + ++D +T
Sbjct: 151 SATAGRIKDFLPKDAVDRAT 170
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +3
Query: 231 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 404
+ HD LLK+ NDN+TK + NQ + + KG D K +KV N+Q +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525
Query: 405 S--RDVFNSEVQNLNFGKNEEAANI 473
+ R FN+E++N + G +E + +
Sbjct: 526 TGLRQGFNAELENKSLGTSESISRM 550
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 35.9 bits (79), Expect = 0.021
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Frame = +3
Query: 159 DKSVILSAFSVMIPLAQLAIASTGESHDELLK-----AIDFPNDNVTKAVFTDLNQKVRS 323
+K+++ S S+ LA +A + G + DELL ++D ++V +AV L + S
Sbjct: 30 NKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESAS 89
Query: 324 IKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN-EEAANIINTWVEDHT 500
G + A V+ EL + + + + + NF + + + IN WV T
Sbjct: 90 -GGPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKAT 148
Query: 501 NKRIKNLVDPSSLDSST 551
NK I ++ S+ T
Sbjct: 149 NKLIPEILPDGSVHVDT 165
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 30.3 bits (65), Expect = 1.1
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = +3
Query: 153 NPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPNDNVTKAVFTDLNQKVRSIKG 332
N +++V+ S S+ LA +A + G + DEL+ + A DL + VR +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG-------AASLDDLEESVR--RA 78
Query: 333 VDLKLANKVYIANGNELNDQFAVV--SRDVFNSEVQNLNFGKNEEAANI-INTWVEDHTN 503
V++ LA++ + G ++ V R + +F + +++ IN WV TN
Sbjct: 79 VEVGLADESE-SGGPRVSYACGVWHDERLALKPAYRAADFQRQPKSSRKKINKWVSKATN 137
Query: 504 KRIKNLVDPSSLDSST 551
K I+ ++ S+ T
Sbjct: 138 KLIREILPDGSVHGGT 153
>04_03_0260 - 13580396-13582990
Length = 864
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 393 FAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLD 542
F VV ++ + +N++ + EEA +IN E N ++ +++D S D
Sbjct: 737 FGVVLMEIISGR-KNIDISQPEEAVQLINLLREKAQNNQLIDMIDKHSSD 785
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 390 QFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLD 542
+F VV ++ + +N++ + EEA +IN E N ++ +++D S D
Sbjct: 531 KFGVVLMEIISGR-KNIDISQPEEAVQLINLLREKAQNSQLIDMIDKHSND 580
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 441 NFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSST 551
N K + + + TWV+ ++ + L+D ++LDSST
Sbjct: 490 NKRKRDATSELSETWVQCDACRKWRRLLDGTALDSST 526
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 478 LIMLAASSF--LPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLA 347
L++L SF LP C S L SL+ T+N S SLP M L A
Sbjct: 1121 LVILGCPSFSSLPASIRCLSNLK-SLELTSNNSLTSLPEGMQNLTA 1165
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 459 EAANIINTWVEDHTNKRIKNLVDPSSLDSST 551
E +N+WV+ T+ IKN+ P S++ +T
Sbjct: 464 EVLGQVNSWVDRVTSGLIKNIATPRSINHNT 494
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 109 FPFLSTLCGSMSLANVKAA-RANMVIIIFMLSVTFVF 2
FPFL T + +N+KAA +V ++F +SVT F
Sbjct: 190 FPFLMTRACCEACSNLKAAFLVAVVFLLFCMSVTLYF 226
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 547 LLSNELGSTKFLIRLLVWSSTQVLIMLAASSFLPK 443
L +NELG +FL+ +++W + L + S K
Sbjct: 356 LANNELGEYEFLVAIVIWYEVLYAVNLVSKSLQGK 390
>11_01_0771 + 6453130-6454488
Length = 452
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 450 KNEEAANIINTWVEDHTNKRIKNLVDPSSLDSST 551
K EEA IN W T K I +++ P S+ T
Sbjct: 169 KAEEARKQINAWARRATGKLITDVLPPRSVGPET 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,676,262
Number of Sequences: 37544
Number of extensions: 219978
Number of successful extensions: 584
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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