Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_H07
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.81
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.9
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.3
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 5.7
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 5.7
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 7.5
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 7.5
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.9
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 24 9.9
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 24 9.9
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 24 9.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.81
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 76 HDTPASGSTASLTTTIHHHPKQSHSEAW*FNSSDYQEHGTVRKN-EKHLPPGSSRGQDRR 252
H+T S +S + HHH + H+++ ++ H RK+ +HL SSR +
Sbjct: 1292 HETSTSSRKSSKSGEHHHHHNEGHADS--SSTRTSLAHQDSRKSLHRHLSRSSSRASKKP 1349
Query: 253 QV 258
+
Sbjct: 1350 SI 1351
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 272 NDPVGQLADCGEQGNTVTHKGHHPDLD-SDTVAYLWTA 382
ND + ++A GE+ T K HP L S + YLW++
Sbjct: 2280 NDFIAEIAPEGEEFLTYLRKHSHPMLKLSSSDCYLWSS 2317
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Frame = -2
Query: 235 LTSLEVDVSHFY----VRCHALDNHLN*ITRLH 149
L+S +V V HFY +RC +D+HL I ++H
Sbjct: 151 LSSKKV-VIHFYHPDFIRCKIIDSHLEKIAKVH 182
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 5.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 10 GCDSSDPRRCQC 45
GCD ++P RC+C
Sbjct: 267 GCDLNNPSRCEC 278
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 5.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Frame = +1
Query: 73 EHDTPASGSTASLTTTIH------HHPKQSHSEAW*FNSSDYQEHGTVRKNEK 213
+ D A ST SL H P+ H +A F S DY+ R NE+
Sbjct: 496 QEDEDADISTVSLPEAAHLREERAESPRGGHYDAEEFPSEDYESRQPRRSNEE 548
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 7.5
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = -1
Query: 167 LNYQASLWLCLG*WCMVVVRLAVEPDAGVSCSYRSQV 57
L++ A + +G W V+ L ++ +SC++++ V
Sbjct: 511 LDFSAQFQIGVGFWSKQVMILTFSDNSSISCAFQTNV 547
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 220 PPGSSRGQDRRQVDHQFERPSGTTCRLRRTRQHRDSQRAPP 342
PP S Q D E +GTT + R + R+PP
Sbjct: 306 PPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKNRSPP 346
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 344 DLDSDTVAYLWTAPNDITGEV 406
D D D AY W++ D GE+
Sbjct: 19 DNDEDLDAYSWSSSTDSAGEI 39
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 164 NYQASLWLCLG*WCMV 117
NY A+ W G WC+V
Sbjct: 104 NYGAAEWTLFGFWCLV 119
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 164 NYQASLWLCLG*WCMV 117
NY A+ W G WC+V
Sbjct: 104 NYGAAEWTLFGFWCLV 119
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 164 NYQASLWLCLG*WCMV 117
NY A+ W G WC+V
Sbjct: 104 NYGAAEWTLFGFWCLV 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,680
Number of Sequences: 5004
Number of extensions: 38289
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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