Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_H07
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 31 0.35
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 31 0.35
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 29 1.4
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993... 28 3.2
08_02_1622 - 28309472-28309871,28310362-28310399 28 3.2
04_04_1542 - 34264994-34265331,34266195-34267029 28 4.3
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 28 4.3
12_02_0899 - 24142210-24142293,24142589-24142634,24142773-241428... 27 5.6
04_03_1022 - 21778315-21779007 27 5.6
02_04_0594 - 24182946-24183641,24184122-24184476,24184553-241847... 27 5.6
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 27 7.4
09_02_0297 - 7051592-7052469,7053197-7053302,7053396-7053471,705... 27 7.4
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 27 7.4
06_01_0352 + 2541022-2542069,2542280-2542335 27 7.4
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 27 7.4
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 27 7.4
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 27 9.8
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 9.8
02_04_0462 + 23131433-23132836 27 9.8
01_06_1581 + 38428780-38430333 27 9.8
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 31.5 bits (68), Expect = 0.35
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 102 RKPHHHHTPSPQAKP 146
++PHHHH P PQA P
Sbjct: 59 QQPHHHHPPPPQAAP 73
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 31.5 bits (68), Expect = 0.35
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 84 PRIRLHRKPHHHHTPSPQAKPQ 149
P + HR+P+H H+PSP PQ
Sbjct: 67 PSHKHHRRPYHPHSPSPSPLPQ 88
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 111 HHHHTPS--PQAKPQ*SLVIQFK*LSRAWHR 197
HHHHTPS P + PQ SL Q S A HR
Sbjct: 20 HHHHTPSVGPSSPPQDSLAAQAMRASAA-HR 49
>10_06_0037 +
9932967-9933112,9934815-9934822,9935213-9935349,
9935761-9936438
Length = 322
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 133 GDGVWWW*GLRWSRMRGYHAHTDLRW 56
GDG+WWW + G+ + RW
Sbjct: 8 GDGLWWWLKEKGKEKNGFISPRQSRW 33
>08_02_1622 - 28309472-28309871,28310362-28310399
Length = 145
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 145 GFAWGDGVWWW*GLRWSRMRG 83
G W GVWWW RW RG
Sbjct: 33 GGKWRQGVWWW---RWRGGRG 50
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 99 HRKPHHHHTPSPQAKP 146
H HHHH P PQ P
Sbjct: 245 HHHGHHHHPPPPQPPP 260
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 27.9 bits (59), Expect = 4.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 103 RWSRMRGYHAHTDLRWH 53
+W + GYH T L+WH
Sbjct: 51 KWCSLEGYHGITRLKWH 67
>12_02_0899 -
24142210-24142293,24142589-24142634,24142773-24142886,
24143445-24143566,24144361-24144480,24144581-24144664,
24144813-24144914,24145589-24145604,24147929-24148329
Length = 362
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 73 EHDTPASGSTASLTTTIHHH 132
+H TP S + A+ T HHH
Sbjct: 24 DHSTPTSAAAAAAATASHHH 43
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 84 PRIRLHRKPHHHHTPSPQAKP 146
P I H PHHHH P+P P
Sbjct: 83 PYIPPHH-PHHHHPPTPAPAP 102
>02_04_0594 -
24182946-24183641,24184122-24184476,24184553-24184743,
24184840-24185046
Length = 482
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 334 PFVSHGVALFAAVCKLSHWVVRIDGPLADDLVPLTSLEVD 215
P +H L +VC L H+V R++ DL PL L D
Sbjct: 186 PDDAHAFLLPISVCNLVHYVYRLNA--TGDLAPLRGLVAD 223
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 99 HRKPHHHHTPSPQAKPQ 149
H HHHH P A PQ
Sbjct: 322 HMDEHHHHQQQPMAAPQ 338
>09_02_0297 -
7051592-7052469,7053197-7053302,7053396-7053471,
7053581-7053648
Length = 375
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 230 RQGDKIVGKWTINSN-DPVGQLADCGEQGNTVTH 328
R+GD IV + TI ++ P G ++ CG G TV H
Sbjct: 324 RRGD-IVQELTIKASCGPAGAVSYCGPAGKTVLH 356
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 149 VKPGNSIQVIIKSM--APYVKMRNIYLQARQGDKIVGKWTINSNDPVG 286
+ P +++ I++SM + Y NI + +G KIV +++S+ PVG
Sbjct: 197 IAPDPTVESILRSMESSQYYSENNIAVARGRGYKIVMTTSLSSDVPVG 244
>06_01_0352 + 2541022-2542069,2542280-2542335
Length = 367
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 380 LSIGKLRYHYLNQGGALCESRCCLVRRSLQVVPLGR 273
+ + K YH + + C+ R LVRR +Q+ P +
Sbjct: 234 IPLSKEDYHIIRRYLVECDGRLLLVRRRMQIRPFAK 269
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Frame = +3
Query: 99 HRKPHHHH----TPSPQAKPQ 149
H K HHHH P P+ KPQ
Sbjct: 23 HHKHHHHHQTTRAPKPKPKPQ 43
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 87 RIRLHRKPHHHHTPSPQAKPQ 149
R+RLHR+ HH PS A P+
Sbjct: 25 RLRLHRRRFLHHLPSLAALPR 45
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 368 KLRYHYLNQGGALCESRCCLVRRSLQVVPLG 276
K+ HYL G CE CC V+R L+ + LG
Sbjct: 94 KIWRHYLI--GNRCEELCCEVQRDLEHLNLG 122
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
Frame = +1
Query: 184 EHGTVRKNE---KHLPPGSSRG 240
+HGT+R ++ KH+PPG++ G
Sbjct: 486 KHGTIRWDQLQQKHIPPGTAEG 507
>02_04_0462 + 23131433-23132836
Length = 467
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 155 PGNSIQVIIKSMAPYVKMRNIYLQARQGDKIVGKWTINS 271
PG+ ++++++ + P + + R+G K VG IN+
Sbjct: 426 PGDRVKMVVELIQPVACEQGMRFAIREGGKTVGAGVINT 464
>01_06_1581 + 38428780-38430333
Length = 517
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +2
Query: 194 PYVKMRNIYLQARQGDKIVGKWTINSNDPVGQLADCG-EQGNTVTHKGHHPDLDSDTVAY 370
PYV + N+Y +AR+ + + + + + C VTH H D D A
Sbjct: 350 PYVMLSNLYSRARRWGDVARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQRAAE 409
Query: 371 LWTAPNDITGEVKFRASI 424
++ ++ ++ R +
Sbjct: 410 IYRKAEEMAARIRARGHV 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,398
Number of Sequences: 37544
Number of extensions: 302066
Number of successful extensions: 1076
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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