Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H07
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.53 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.70 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   0.93 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 81  YPR-IRLHRKPHHHHTPSPQAKPQ*SLVIQ 167
           YP  I++   PHHH  P     PQ   ++Q
Sbjct: 453 YPAAIQIGHTPHHHPHPPETPGPQVETILQ 482



 Score = 23.4 bits (48), Expect = 1.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 96  LHRKPHHHHT 125
           +H  PHHHH+
Sbjct: 426 IHATPHHHHS 435


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 99  HRKPHHHHTPSPQAKPQ 149
           H++ HHH +  PQA+ Q
Sbjct: 811 HQQLHHHQSTHPQAQAQ 827


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 220 PPGSSRGQDRRQVDHQFERPSGTTCRLRRTRQHRDSQRAPP 342
           PP SS G D  ++D  F+  +     L   R  + +   PP
Sbjct: 346 PPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPP 386


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 148 SEAW*FNSSDYQEHGTVRKNEK 213
           SE W + S   +EHG  +K  K
Sbjct: 196 SELWVYKSKASEEHGNKKKKNK 217


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 70  YEHDTPASGSTASLTTTIHHHPKQSHSEA 156
           YE  T    S    +   H  P Q+HS A
Sbjct: 614 YEEPTVGEISQDGSSPHFHQSPSQNHSSA 642



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 326 HKGHHPD 346
           H GHHPD
Sbjct: 280 HYGHHPD 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,062
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)