Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H06
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   2.4  
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    27   5.6  

>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 71   TVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQKAKDIADGR 196
            ++ A +  K + G G R RDA+++ G  + +++    I D R
Sbjct: 2466 SILALETLKRVVGAGNRARDALVAQGLKVGLVEVLLGILDWR 2507


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 107 GVGQRVRDAIISAGPAIDVLQKA-KDIADGRDSYEE 211
           G G+ VR A+ + GPA D  + A  D+  G +  EE
Sbjct: 317 GTGKTVRVAVFAEGPAADEARAAGADVVGGDELIEE 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,494,664
Number of Sequences: 37544
Number of extensions: 134895
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)