Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H06
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 89  FFKELEGVGQRVRDAIISAGPAIDVLQKAKD-IADGRDSYEE 211
           F  +  G  + V D +IS G  ID+LQK KD + D R S  E
Sbjct: 630 FLSDERGFNEHV-DKLIS-GQQIDILQKVKDALIDARPSSAE 669


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 89  FFKELEGVGQRVRDAIISAGPAIDVLQKAKD-IADGRDSYEE 211
           F  +  G  + V D +IS G  ID+LQK KD + D R S  E
Sbjct: 715 FLSDERGFNEHV-DKLIS-GQQIDILQKVKDALIDARPSSAE 754


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 23  SVRILIFVAICVMFVSTV 76
           SV +L F+A+C+++ ST+
Sbjct: 620 SVAVLNFIAVCILYASTI 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,895,907
Number of Sequences: 27780
Number of extensions: 136532
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)