Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_H05
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.37
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 27 2.0
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 27 2.0
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 26 3.4
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 3.4
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 26 3.4
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 7.9
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 25 7.9
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 7.9
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.1 bits (62), Expect = 0.37
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +1
Query: 70 VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDYGEGGFWVSYEDP 246
V L+SYP++ ++ + + +LR++N P + F +A P E GF+V D
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873
Query: 247 DT----AGNKASYVKTKNLGGVSI-MDLSMD 324
+T A +AS+ +N + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 208 YGEGGFWVSYEDPDTAGNKASYVKTKNLGGV 300
Y + G W S + D NKA Y+K +L G+
Sbjct: 138 YEDAGEWYSSDQADALANKA-YLKAADLAGL 167
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 363 DRIFISSAKTTKIIHGKVHDGHTAKVLCFHVTSF 262
D +F + T ++H K G T V+C ++ +F
Sbjct: 114 DALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAF 147
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 3.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 121 NQNGKRPHLRKVNDPSKRFGTYAFRLPDDYGEGGFWVSYEDPDTAG----NKASYVKTKN 288
N N K P N+P+ F T P DYGE +++ + ++G + S +K
Sbjct: 47 NINLKDPKQMGANNPNL-FNTDESTTPPDYGEDSLSITHRENHSSGTADNSSTSPLKKAF 105
Query: 289 LGGVSIMDLSM 321
L +SI L++
Sbjct: 106 LSFISIFVLNV 116
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 28 IHADKGGEAGPYTKVQGLLSY 90
+H + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 3.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 121 NQNGKRPHLRKVNDPSKRFGTYAFRLPDDYGEGGFWVSYEDPDTAG----NKASYVKTKN 288
N N K P N+P+ F T P DYGE +++ + ++G + S +K
Sbjct: 47 NINLKDPKQMGANNPNL-FNTDESTTPPDYGEDSLSITHRENHSSGTADNSSTSPLKKAF 105
Query: 289 LGGVSIMDLSM 321
L +SI L++
Sbjct: 106 LSFISIFVLNV 116
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 91 PEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDY 210
PE+ + L P ++ L + PS +FG +F P +
Sbjct: 66 PEVSSPLAEPYESSSSFRLSLSSPPSSKFGGPSFGTPKPF 105
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 222 ATFTIIIRKAEGIGPKTFARIVDLTKMRTLSVLVGVN 112
A +I+ EGI R+ D+ K ++ S LVG N
Sbjct: 120 AEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPN 156
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 196 LPDDYGEGGFWVSYEDPDTAGNKASYV---KTKNLGGVSIMDL--SMDDFRGL 339
LPDDY W ++E G K + K NL G +I+ + ++D +G+
Sbjct: 610 LPDDYNFPKAWNAFEQVRARGGKPIIITDKKLDNLEGFTIIKVPKTVDCLQGI 662
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,307
Number of Sequences: 5004
Number of extensions: 45266
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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