Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_H01
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 238 5e-64
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 43 4e-05
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 42 7e-05
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 30 0.24
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 0.95
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.2
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 27 2.9
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 3.8
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.7
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 6.7
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.7
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 8.9
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 8.9
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 8.9
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 238 bits (582), Expect = 5e-64
Identities = 111/187 (59%), Positives = 148/187 (79%), Gaps = 3/187 (1%)
Frame = +3
Query: 48 KGGLKTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDM 224
K ++++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 9 KKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQDK 68
Query: 225 ATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKG 404
TIQVYEETSG+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +QSIYIP+G
Sbjct: 69 CTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRG 128
Query: 405 VNVPALAREVDWEFNP-LHVKVGSHITGGDLYGIVHENTLVK-HRMLVPPRAKGTVTYIA 578
+N +L RE W+F P +++G H++GGD++G V EN+L H++++PPRA+GTVTYIA
Sbjct: 129 INTESLNREHKWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVTYIA 188
Query: 579 PAGNYKV 599
AG+Y V
Sbjct: 189 EAGSYHV 195
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 4e-05
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Frame = +3
Query: 93 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 263
+ V +++GP+V + + E+V + + G+++ + G A +QV+E TSGV
Sbjct: 24 YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83
Query: 264 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL-KDINELTQSIYIPKGVNVPALAR 428
V + TG + + + +LG +F+G P+ K N L + G + AR
Sbjct: 84 VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYAR 140
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 41.9 bits (94), Expect = 7e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +3
Query: 213 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIY 392
E + TI + + T G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160
Query: 393 IPKGVNVPALARE 431
P + P+ +
Sbjct: 161 SPIHADAPSFEEQ 173
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 30.3 bits (65), Expect = 0.24
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = +3
Query: 81 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 260
+EE VF++ +++ ++S + +Y +V V G + + Q+ E+
Sbjct: 201 DEEDIALVFSLLNCIISYGRISSAVLYSIVEVVCRAKFGLVA---SSQSAQQIVEKLLKT 257
Query: 261 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGVNVPALAREV 434
L + K + E G +I GIQ ++ +S+Y +G+ + L R +
Sbjct: 258 ATKYEALNSLKRIMEETDEGSYIAIMGGIQIVSALFTDIPRSVYCTRGMLLGFLQRSL 315
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 346 IPSKMEPRIPGPSSTDSGLPVRSTGSPTVTPD 251
IPS + P P T G P R PT+ PD
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 379 VSSLMSFRGRWIPSKMEPRIPGPSSTDSGLPVRSTGSPTVTPDVSS 242
++S ++ +P +E +PGPS+ SG T + T+T DVSS
Sbjct: 339 ITSTLATASGTVPGTVEVILPGPSTIYSG-----TVATTITYDVSS 379
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +3
Query: 312 GPGILGSIFDGIQRPLKDINELTQSIYIPKGVNVPALAREVDWEFNPLHVKVGSHITGGD 491
G ++ S+ + R LKDI T+++ + + + + W+ N H+K I
Sbjct: 264 GQELIPSVIGPMARSLKDIEFFTETVIASEAWKIDSKLLPIPWK-NQSHLKSKKLI---- 318
Query: 492 LYGIVHENTLVK-HRMLVPPRAKGTVTYIAPAGNYKV 599
+G++ + +VK H ++ RA V + Y+V
Sbjct: 319 -FGVLKTDGIVKPHPPII--RALNEVVAVLEKSGYEV 352
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 213 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 308
E D A++ + T+ +T DPV + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 547 PGPRVPSHTSLPLVTTKSLDVVL 615
P P PS +S LV SLD+ L
Sbjct: 166 PNPATPSSSSCNLVNANSLDIYL 188
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1
Query: 243 RIPEWWPC 220
R+P WWPC
Sbjct: 79 RVPNWWPC 86
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 249 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 377
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/51 (23%), Positives = 21/51 (41%)
Frame = +3
Query: 306 ELGPGILGSIFDGIQRPLKDINELTQSIYIPKGVNVPALAREVDWEFNPLH 458
E P + ++F + + + IP GVN+P F+P+H
Sbjct: 194 ETNPQLSYAVFQAMLMKRYTSESVVADLLIPAGVNLPGAQEPNRGYFSPMH 244
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 396 PKGVNVPALAREVDWEFNPLHVKVGSHITGGDLYGIVHENT 518
P VNVP V + VGS++ DL HENT
Sbjct: 516 PLWVNVPETEIAVGMPLTTQYTSVGSNLQSSDL--SAHENT 554
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -1
Query: 102 HNRTSPHSLHWRSSS--NRPCSP 40
H+ SP SLH +SSS RP SP
Sbjct: 437 HSYGSPKSLHHKSSSAGERPVSP 459
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 245 LVYLNGGHVTFQTDNLTDELIVPYTDQLVH 156
+ +L+GG V + N E I+P T+ ++H
Sbjct: 367 MYWLDGGKVYYDLFNKVGEPILPLTEWIMH 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,622
Number of Sequences: 5004
Number of extensions: 60564
Number of successful extensions: 198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -