Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H01
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...   269   9e-73
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    43   2e-04
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    38   0.006
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    38   0.006
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    38   0.006
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    36   0.024
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score =  269 bits (660), Expect = 9e-73
 Identities = 125/173 (72%), Positives = 149/173 (86%), Gaps = 1/173 (0%)
 Frame = +3

Query: 84  EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVT 263
           E  +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD ATIQVYEETSGVT
Sbjct: 4   ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGVT 63

Query: 264 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGVNVPALAREVDWE 443
           +GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQSIYIPKGV+  AL+RE  W+
Sbjct: 64  IGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREARWD 123

Query: 444 F-NPLHVKVGSHITGGDLYGIVHENTLVKHRMLVPPRAKGTVTYIAPAGNYKV 599
           F     ++VG H+TGGD+ G V EN L+KH++L+PP A GT+T++AP+G Y V
Sbjct: 124 FVVSKDLRVGGHVTGGDIIGTVDENLLIKHKILLPPSACGTITFVAPSGQYTV 176


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
 Frame = +3

Query: 66  IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMAT 230
           I N     R  Y  V  V+GP+V    +      E+V++     ++  G+++ +  + A 
Sbjct: 18  IRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAV 77

Query: 231 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 359
           +QV+E TSG+   + +   TG  L   +   +LG IF+G  +P+
Sbjct: 78  VQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPI 121


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +3

Query: 81  NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 260
           N E  G V ++   +     +      E+V    + + G  + L+ D   + V+     +
Sbjct: 25  NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 83

Query: 261 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 359
             GD V RTG  + V +G G+LG + D +  P+
Sbjct: 84  REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +3

Query: 81  NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 260
           N E  G V ++   +     +      E+V    + + G  + L+ D   + V+     +
Sbjct: 52  NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 110

Query: 261 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 359
             GD V RTG  + V +G G+LG + D +  P+
Sbjct: 111 REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
 Frame = +3

Query: 66  IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMAT 230
           I N   + +  Y  VF V+GP+V    +      E+V++        +G+++    + A 
Sbjct: 30  IQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAV 89

Query: 231 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 359
           +QV+E T+GV         TG      +   +LG IF+G  +P+
Sbjct: 90  VQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPI 133


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
 Frame = +3

Query: 96  GYVFAVSGPVVTAE--KMSGSAMYELVRVGYN-ELVGEIIRLEGD-MATIQVYEETSGVT 263
           G + AV G VV  +  +     +  L  VG +  L+ E+ +  GD +      + T G+ 
Sbjct: 70  GRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLV 129

Query: 264 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 365
            G PV  TG P+ + +GP  LG I + I  P+ +
Sbjct: 130 RGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDE 163


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 499 VLSTKTLWLNTGCWCRPGPRVPSHTSLPLVTT 594
           VL T+  W+    +    P  P  T LPL+TT
Sbjct: 404 VLQTQAQWICAAFYPTAAPPTPPPTRLPLITT 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,738,339
Number of Sequences: 27780
Number of extensions: 360567
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)