Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G22
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    28   0.61 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.4  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    27   1.4  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   3.3  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   3.3  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   5.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    24   9.9  

>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -2

Query: 353 GRSHENSLVTLQLKYDPSSELDHALTSRLYFFSAFQLSTNKKYSRPS---PLLVISEPSS 183
           G   E ++  L+L ++P  ++++   +    F A  L T  KY       P+L  S  SS
Sbjct: 168 GNHDEFTIRNLRLSFEPD-KINNVEMAASIGFLAHLLQTLSKYLEKELAYPILCASSRSS 226

Query: 182 LLFTITNSLPS 150
           +L T+T  +P+
Sbjct: 227 ILDTLTPDIPT 237


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 217 PHHCSSYPNLHHYCLPSQIPCPLC 146
           P  C  +P + H C P+  PCP C
Sbjct: 649 PKSCH-HPQVKHNCHPTSEPCPPC 671


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -2

Query: 326 TLQLKYDPSSELDHALTSRLYFFSAFQLSTNKKYSRPSPLLVISEPSSLLFTI 168
           ++Q  +   S   H L +R +  S  +L+    +SR   +  +S+   +L+T+
Sbjct: 170 SVQSSFSQDSVYCHELIARFHIISLHELAHTPNFSRQQEIEQLSKSMEILYTL 222


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 244 CRPIKSIPAPHHCS 203
           C  + +IP PHHCS
Sbjct: 261 CGTLVAIPTPHHCS 274


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 245 LSTNK-KYSRPSPLLVISEPSSLLFTITNSLPSL 147
           LST K K  RPS L++ ++ SS+LF   N+  SL
Sbjct: 476 LSTPKGKSLRPSKLMLHNQDSSILFQTENAPHSL 509


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 438 DIKWFDSLLFD*KKNISKLKKD 373
           D++W +S+ F  K+N+ +L+++
Sbjct: 77  DVEWVESVTFHRKQNLEQLRRE 98


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -2

Query: 347 SHENSLVTLQLKYDPSSELDHALTSRLYFFSAFQLSTNKKYSRPSPLLVISEPSSLLFTI 168
           S  NS+      + PSS +  ++   +   SA   ++++ +S  S L+VI   +S L T 
Sbjct: 442 SPSNSISYTNNTFIPSSSIKSSIVYSVTPTSAENYTSSEAFSTSSSLVVIPPVNSSLVTS 501

Query: 167 TNS 159
           + S
Sbjct: 502 STS 504


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 226 IPAPHHCSSYPNLHHYCLPSQIPCPL 149
           +PAP  C+ Y N H         CP+
Sbjct: 478 LPAPEECNIYHNEHIQVQEDNYLCPI 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,584
Number of Sequences: 5004
Number of extensions: 33425
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)