Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G22
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199...    41   4e-04
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958...    29   1.8  
03_03_0064 - 14188987-14189095,14190433-14190443,14191005-141910...    27   9.8  
03_02_0456 - 8634618-8635062,8635155-8635322,8635414-8635698,863...    27   9.8  
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    27   9.8  

>12_01_1021 -
           10419383-10419529,10419684-10419733,10419821-10419938,
           10420498-10420540,10420674-10420825,10420876-10420965,
           10422881-10423013,10424397-10424515
          Length = 283

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 1   GFLSVFQMTLNAYNYNDWVSFFGDATKFGLGLFSLVFDIFFILQHYVFY 147
           G L+  QM + + + +  V+F+G+  K  L L  + FDI FI+QHYV Y
Sbjct: 204 GVLNFGQMGVQSIDQHTLVNFYGNIGKTLLSLEVVFFDILFIIQHYVLY 252


>03_04_0037 +
           16694760-16695227,16695563-16695642,16695735-16695828,
           16695973-16696071,16696650-16696742,16696822-16696941,
           16697422-16697525,16697734-16697806,16698023-16698085
          Length = 397

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 223 PAPHHCSSYPNLHHYCLPSQIPC 155
           PAP H      LH+ C P+ +PC
Sbjct: 61  PAPRHRRKQRPLHYACRPTSLPC 83


>03_03_0064 -
           14188987-14189095,14190433-14190443,14191005-14191061,
           14191472-14191885
          Length = 196

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 177 VYHHKFLALSVEDVVLQYEEYIEDQAEETETEL 79
           V +   + ++V DVVL+ +  +EDQAE  E ++
Sbjct: 116 VLYRGAIQIAVRDVVLEKDPNVEDQAELGEEKI 148


>03_02_0456 -
           8634618-8635062,8635155-8635322,8635414-8635698,
           8635793-8636178
          Length = 427

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 317 LKYDPSSELDHALTSRLYFFSAFQLSTNKKY 225
           L+YDP ++  H + S L F +  Q+S ++++
Sbjct: 240 LRYDPETKAAHVVLSGLVFPNGVQISDDQQF 270


>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
            16032434-16032715,16032790-16032948,16033034-16033390,
            16033482-16033622,16033919-16034045,16034121-16034263,
            16034740-16034917,16035019-16035552,16035628-16035812,
            16036551-16036637,16036710-16036850,16036896-16037175,
            16037944-16038020,16038326-16039138,16039292-16039801,
            16039926-16040056,16040192-16040246,16040364-16040564,
            16040640-16040909,16041103-16041184,16041271-16041434,
            16041532-16041690,16041762-16042083,16042158-16042544,
            16042811-16042999,16043233-16043317,16043458-16043753,
            16043862-16043965,16044484-16044513,16044602-16044817,
            16044923-16045540,16045718-16045993,16046619-16046762,
            16046854-16046962,16047291-16047475,16047557-16047670,
            16048348-16048479,16048929-16049249,16049424-16049891,
            16054482-16054547,16054691-16054828,16054917-16055015,
            16057098-16057194,16057661-16057761,16057858-16058085,
            16059175-16059381,16059451-16059571,16059921-16059988,
            16060148-16060213,16060396-16060509,16060949-16061300,
            16063571-16063663,16063764-16063922,16064224-16064287,
            16064385-16064577,16064673-16064710,16065510-16065645,
            16065726-16065914,16065994-16066095,16067660-16067777,
            16067861-16067964,16070338-16070346,16071428-16071475,
            16071581-16071676,16072430-16072533,16073964-16074045,
            16076573-16076601,16076708-16076963
          Length = 4246

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 211  GEGREYFLLVDSWNAEKKYNLDVKA*SSSEDGSYF 315
            G  ++Y + V  ++ E K ++DVKA +S  DGSY+
Sbjct: 3435 GSCKQYSIGVSLFDLENKEHVDVKAFTS--DGSYY 3467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,671
Number of Sequences: 37544
Number of extensions: 213579
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)