Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G21
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0824 - 32243495-32244319,32244449-32244859                       31   0.67 
01_06_0828 - 32263312-32263386,32263477-32263563,32263659-322637...    31   0.89 
01_01_1152 + 9170628-9171899                                           29   2.0  
11_06_0235 + 21588212-21589029,21589426-21591358                       28   4.7  
11_02_0012 - 7346282-7347136,7347234-7347593                           28   4.7  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    28   4.7  
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854           28   6.2  

>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 453 KGDSVVVSEAFQEAFIKVDEEGATAGAFT 539
           + + +VVS  + E+F++V+EEG  A A T
Sbjct: 332 EAEKIVVSAVYHESFVEVNEEGTEAAAAT 360


>01_06_0828 -
           32263312-32263386,32263477-32263563,32263659-32263777,
           32263886-32264124,32264219-32264275,32264370-32264456,
           32264545-32265086,32265157-32265405
          Length = 484

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 363 STILYIRLFKYFLVFPSTLEAYSFKVSFS---LWVYLFVSKSIFTIILLVKLY 214
           S++ ++ +  Y+LV       + F++S +   +WV + +   + T+ILLV LY
Sbjct: 401 SSVAFVNIGCYYLVGLPIAAVFGFRLSLNATGIWVGMLIGTILQTVILLVILY 453


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 447 IVKGDSVVVSEAFQEAFIKVDEEGATAGAFT 539
           +  GD + ++E + +A I+VDE G  A A T
Sbjct: 347 VTGGDGLFIAEVYHQATIEVDELGTVAAAST 377


>11_06_0235 + 21588212-21589029,21589426-21591358
          Length = 916

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 227 RRIIVNIDFETNRYTHKLNDTLKLYASRVEGKTKKYLKRRMYSIV 361
           +++  +I  E N+Y +   DT+ L    +  + ++YL +R Y IV
Sbjct: 233 KKVFKDILIELNKYNYMKFDTMALSERYLIDELREYLHKRRYLIV 277


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 447 IVKGDSVVVSEAFQEAFIKVDEEGATAGAFT 539
           ++ G+ VVV +    A ++V+EEG  A A T
Sbjct: 326 MIDGELVVVEKVMHRAVVEVNEEGTEAAAAT 356


>09_02_0286 -
           6898041-6898144,6898881-6899005,6899158-6899207,
           6899245-6899386,6899951-6900020,6900077-6900216,
           6900291-6900365,6901083-6904723
          Length = 1448

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 423 IFNEPAPNIVKGDSVVVSEAFQEAFIKVDEEGATA 527
           +F  PAP I  G+      AF+ A +  D +GA A
Sbjct: 20  LFRAPAPAIAVGEEAAALLAFRRASVADDPDGALA 54


>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
          Length = 751

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 275 CGYTYLFQSQYLQLFFWLNFIVFRGFRYYFLCII 174
           CG  + F  ++   F WL + V R   Y F+C +
Sbjct: 146 CGGMHRFLPKWFSEFKWLEYSVHRDAAYCFVCYL 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,273
Number of Sequences: 37544
Number of extensions: 235541
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)