Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G19
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   249   2e-67
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   245   3e-66
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    29   0.47 
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   1.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   2.5  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   7.7  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  249 bits (610), Expect = 2e-67
 Identities = 122/172 (70%), Positives = 140/172 (81%), Gaps = 1/172 (0%)
 Frame = +1

Query: 52  KIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 228
           K+GINGFGRIGR+VLR +I  G   VVA+NDPFI LDYM Y+F+YDSTHGRF+G+VE   
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 229 *HLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAP 408
             LV++G  I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL GGAK+VIISAP
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 409 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAXVIHDDFEIIEGLMT 564
           S DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLA VI+D F I EGLMT
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMT 176


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  245 bits (600), Expect = 3e-66
 Identities = 120/172 (69%), Positives = 139/172 (80%), Gaps = 1/172 (0%)
 Frame = +1

Query: 52  KIGINGFGRIGRLVLR-ASIDKGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 228
           K+GINGFGRIGR+VLR A + K   VVAINDPFI L+YM Y+F+YDSTHGRF G+VE  D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 229 *HLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAP 408
             LV++G  I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL GGAK+VIISAP
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 409 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAXVIHDDFEIIEGLMT 564
           S DAPM+VVGVN E ++PS KVISNASCTTNCLAPLA VI+D F I EGLMT
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMT 176


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 25  KYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPF----IGLDYMVYLFQYDST 192
           KY L   +S +   G GR+  L++  SI K  D +    PF      + Y++   Q D  
Sbjct: 627 KYKLDSCVSTLTRMGLGRVSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQ-DIL 685

Query: 193 HGRFKGTVEAVD 228
             RF  T E V+
Sbjct: 686 RRRFHATSEQVE 697


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 59  ELTVLVASVAWCSVLRLIRV 118
           +L+V VA +AWC   RL+R+
Sbjct: 122 KLSVAVAELAWCPKSRLVRI 141


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 252 LSVYDEVSIYGLNGTLETTVSRIILEKV 169
           L +   V++ G NG  +TT+ ++ILEKV
Sbjct: 617 LDLKSRVALVGPNGAGKTTLIKLILEKV 644


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
 Frame = +1

Query: 25  KYTLTIIMS----KIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD------YMVYL 174
           +Y +TI +     ++ +N F  +G+L++  + D+  D+   ND    ++      YM Y+
Sbjct: 508 RYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQE-NDENAFMNCMAEACYMPYI 566

Query: 175 FQYDSTHGRFKG 210
           FQ  +    FKG
Sbjct: 567 FQCRAKQDNFKG 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,901
Number of Sequences: 5004
Number of extensions: 49632
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)