Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G17
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    28   0.73 
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    28   0.73 
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    26   2.2  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   3.9  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   5.2  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   5.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.8  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   9.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    24   9.0  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   9.0  

>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 159 ADIVIIGRGFIGASTAYWLKKRTGEGLSVVILE 257
           +DIVI+G G  G + AY++  R  + L + I+E
Sbjct: 77  SDIVIVGAGSAGLTAAYYIGTRRPD-LKIAIIE 108


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 153 EHADIVIIGRGFIGASTAYWLKKRTGEGLSVVILEEDFS 269
           + ADI+IIG G  G +    L +   +G  V++LE D S
Sbjct: 4   QDADIIIIGAGITGCALGAALGR---QGRKVLVLERDMS 39


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 165 IVIIGRGFIGASTAYWLKKRTGEGLSVVILEEDFSYKASQE--NLEHVALTRH 317
           IVI+G G +G++TA+ L   +G    +VI++ +   KA  E  +L H A   H
Sbjct: 23  IVIVGAGNVGSTTAFTL-LLSGLAAEIVIIDLN-KKKAEGEAMDLNHAAPLSH 73


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 162 DIVIIGRGFIGASTAYWL 215
           DIVI+G G IG +TA+ L
Sbjct: 9   DIVIVGAGVIGLTTAWIL 26


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = -1

Query: 442 SLANTSEPVGL*SRSTSPRWQLTSLKKSAVNCERSIFSGSAKCRVSATCSKFSCDALYEK 263
           S +N + P    S S SP+   +S      N     FS  +     +  +K   DAL  K
Sbjct: 472 SQSNNTTPTSAKSDSASPQNWFSSFSYQTPNSASPPFSSLSHTLPISALAKIGHDALNRK 531

Query: 262 SSSKITTER 236
           + + + + R
Sbjct: 532 NHASLPSRR 540


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 322 AKCRVSATCSKFSCDALYEKSSSKITTERPSPVRFFNQ*AVEAPIKPRPII 170
           AK    A  ++       E+ SSK  T   +P    NQ    API   PI+
Sbjct: 225 AKANELALANQRQSSEAAEQPSSKNNTSGANPPSSNNQEVTSAPIPAAPIV 275


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 21  RLNKVNDMLIRFYSTLSPLIKTWNVISKDIPVLFKLKK 134
           R  +VN +L +FY +LSPL   W      IP+L K++K
Sbjct: 182 RDTRVN-ILEQFYRSLSPLELRWL-----IPILLKVRK 213


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 66  LSPLIKTWNVISKDIPVLFKL 128
           ++PL++ W++I  D P LF L
Sbjct: 587 ITPLLQKWSMIPDDDPNLFPL 607


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 432 TPVNPWDYNQDQH 394
           +PV+PWD N  QH
Sbjct: 64  SPVSPWDKNISQH 76


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 246 VILEEDFSYKASQENLEHVALTRHFALPENILLSQFTADFLRD--VNCHLG--DVDLDYN 413
           + L+  +   +S  +L HVAL  +   P  ++ + +TA    +  + C  G    D+ Y 
Sbjct: 383 IYLDSSYVPFSSGSSLSHVALHHYDCEPNFLMRAFYTAGATLESYIECAYGSDQADVAYG 442

Query: 414 PTG 422
           P G
Sbjct: 443 PIG 445


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 151 QNTPILLL*AVVLSGLQLLIG*KSVLAKVFLW 246
           + TP+L    V +SG ++ I   S   ++++W
Sbjct: 142 EKTPLLFCATVQISGNEIYIASASAFQQIYVW 173


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 373 SLKKSAVNCERSIFSGSAKCRVSATCSKFSCDALY 269
           +L K   NC RS++S +       T +  SC  +Y
Sbjct: 678 ALSKFPTNCLRSVYSHTVSLMKYLTSAVISCWRIY 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,306
Number of Sequences: 5004
Number of extensions: 31797
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)