Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_G17
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 29 1.3
07_03_0683 + 20671067-20671951,20672030-20672203 29 2.2
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548... 28 2.9
02_03_0317 - 17659356-17659634,17660028-17660552,17660587-176606... 28 2.9
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 5.1
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 27 6.7
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539... 27 6.7
09_04_0024 + 13877489-13877722 27 8.8
07_03_1415 + 26410999-26411148,26411228-26411290,26412623-264126... 27 8.8
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 153 EHADIVIIGRGFIGASTAYWLKKRTGEGLSVVILEEDFS 269
+ DIVI+G G G++ AY L K +G V ++E D +
Sbjct: 55 DRTDIVIVGAGVAGSALAYTLGK---DGRRVHVIERDMT 90
>07_03_0683 + 20671067-20671951,20672030-20672203
Length = 352
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 162 DIVIIGRGFIGASTAYWLKKRTGEGLSVVILEEDFS 269
D+V++G G G S AY L K +SV ++E+ S
Sbjct: 84 DVVVVGAGSAGLSCAYELSK--DPSVSVAVIEQSVS 117
>08_01_0632 -
5479118-5479555,5479701-5479866,5480452-5480565,
5480713-5480849
Length = 284
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 33 VNDMLIRFYSTLSPLIKTWNVISKDIPVLFKLKKQEFTP-----PEHADIVIIGRGFIGA 197
VND L+++ SP +K ++IS + + K+ FT P D+V+ GFIG
Sbjct: 73 VNDELLQYIGDRSPSLKGLSLIS--LFSYLDISKKVFTEFISKCPCLEDLVVEEGGFIGG 130
Query: 198 STAYWLKKRTGE 233
T + L E
Sbjct: 131 ETGFTLSVEVTE 142
>02_03_0317 -
17659356-17659634,17660028-17660552,17660587-17660661,
17661699-17662496
Length = 558
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 45 LIRFYSTLSPLIKTWNVI 98
LI FYST PL K+W+V+
Sbjct: 482 LITFYSTTKPLEKSWHVL 499
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 162 DIVIIGRGFIGASTAYWLKKRTGEGLSVVILEEDFS 269
D++++G G G++ AY L K +G V ++E D +
Sbjct: 66 DVIVVGAGVAGSALAYTLGK---DGRRVHVIERDLT 98
>11_06_0211 + 21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 302 STHTTFCTPRKYTSLTVHC 358
STH T CT YT T +C
Sbjct: 1015 STHFTECTDENYTQATAYC 1033
>04_01_0408 -
5393354-5393659,5393974-5394219,5394442-5394583,
5394981-5395076,5395153-5395265,5395345-5395559,
5395645-5395742,5395815-5395935,5396020-5396240,
5396625-5396805,5396906-5397188,5397346-5397395,
5398565-5398805
Length = 770
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 54 FYSTLSPLIKTWNVISKDIPVLFKLKKQEFTPPEHADIVII 176
FY+TL PL WN+ + D K+K + + D++ +
Sbjct: 479 FYATLEPLDHKWNIENFDARAYQKIKTKNMPCHVNEDLLAL 519
>09_04_0024 + 13877489-13877722
Length = 77
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 205 AVEAPIKPRPIITISACSGGVNSC 134
AVE+P P P+++ S S G + C
Sbjct: 37 AVESPPPPPPLVSASKTSSGASDC 60
>07_03_1415 +
26410999-26411148,26411228-26411290,26412623-26412694,
26412798-26412905,26413023-26413103,26413176-26413229,
26413282-26413315,26413405-26413451,26413538-26413747,
26413861-26413962,26414240-26414356,26414460-26414531,
26414645-26414719,26414866-26414970
Length = 429
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 432 TPVNPWDYNQDQHHQDGN*HLLKSQ 358
TP P+D + D + DGN H+ ++Q
Sbjct: 251 TPAMPFDDDDDNNISDGNLHMTENQ 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,273
Number of Sequences: 37544
Number of extensions: 190042
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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