Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G16
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.034
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   0.97 
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   1.7  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    23   6.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    23   9.1  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.034
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 149 SALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGA--AETVDKARTR 3
           SA  S   AIA P +I P   +RP+ S+F+K+      A     +D ART+
Sbjct: 194 SATLSGALAIADPNIISPIDSVRPLLSLFIKSITSAISALILSPLDIARTK 244


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   LWFWLCRQFRLRLSRNGKSSRKLKK 76
           LW WL R   LR++  G +   L+K
Sbjct: 419 LWLWLFRMLNLRIASMGNNHTLLEK 443


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 149 SALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSG 36
           S L  P T IA PA++   + L   F  F K F F  G
Sbjct: 52  SNLRQPITTIAQPAILACSIALLRAFPPFTKKFRFYVG 89


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 62  RKLKKWVATSETALSRLDQR 121
           ++LKK ++ +ET L RLD++
Sbjct: 67  KQLKKSLSEAETKLKRLDEK 86


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 200  SQKGLHYFKLKLQLIYPSALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGAAET 24
            ++K L  F  +    Y  A   P TA+     I    +  P   + LKTFHF   AA+T
Sbjct: 1021 TEKQLRSFVDRCWEKYMRAKVEPGTAVGA---IGAQSIGEPGTQMTLKTFHFAGVAAQT 1076


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,010
Number of Sequences: 5004
Number of extensions: 9528
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)