Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G16
         (292 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.4  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 225 LSKLNNIIITKRFTL 181
           L+KLNN I  KRF L
Sbjct: 99  LTKLNNAIEEKRFEL 113


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -3

Query: 161 LIYPSALASPKTAIAGPALIMP 96
           +IYP  + +P T +     ++P
Sbjct: 843 VIYPPVIGTPSTGMMYKPFLIP 864


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 48   MESLQEN*KNGSQHQKRHY 104
            M+  QEN +N    ++R+Y
Sbjct: 1648 MKESQENQQNAETQRERYY 1666


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 48   MESLQEN*KNGSQHQKRHY 104
            M+  QEN +N    ++R+Y
Sbjct: 1644 MKESQENQQNAETQRERYY 1662


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,682
Number of Sequences: 438
Number of extensions: 606
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)