Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G14
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   3.0  
07_01_0257 - 1925145-1926140                                           27   9.2  

>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 111  TVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQKAKDIADGR 236
            ++ A +  K + G G R RDA+++ G  + +++    I D R
Sbjct: 2466 SILALETLKRVVGAGNRARDALVAQGLKVGLVEVLLGILDWR 2507


>07_01_0257 - 1925145-1926140
          Length = 331

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 250 SSLESRPSAMSLAFCSTSIAGPALIIAXXXXXXXXXXXLKKSHAVT 113
           SSL   P   +L F  TS+AGPA                KK+ A+T
Sbjct: 108 SSLHLVPKPKALLFAPTSMAGPAAKKLALEGKAAPSLVKKKAAAIT 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,069,763
Number of Sequences: 37544
Number of extensions: 145414
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)