Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G13
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0379 + 43177978-43178572,43178643-43178674                       34   0.075
01_06_1092 + 34469732-34470118                                         33   0.13 
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639...    31   0.40 
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979     28   3.7  
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027...    28   4.9  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   4.9  
09_01_0053 + 873918-874411,875255-875492,875682-875702                 27   8.6  

>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 124 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 8
           L Y C  C FR+    T S+T +HL  R +YR++  Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 289 GAKLASLHPCICTREKDPVCGSDGVTY 369
           G   A L P  C R  DPVCG+DGVTY
Sbjct: 49  GGSEAQLCPVRCFRP-DPVCGADGVTY 74


>01_01_0010 -
           62670-62783,62877-63020,63339-63431,63665-63779,
           63902-64152,64248-64431,64694-64950
          Length = 385

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 359 PSLPQTGSFSRVHIHGCKLASLAPWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 198
           PS      FS V I+ C L  L   +S S    +DG++F+ +   H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242


>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
          Length = 158

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 202 R*SHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 38
           R S RR  +   S+    P +  + RL  CC++    S +  G     H  +RRD
Sbjct: 43  RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97


>08_01_1007 -
           10201181-10201298,10202180-10202484,10202577-10202726,
           10202954-10202956
          Length = 191

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +1

Query: 211 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 309
           + NKC   +EC QK  P L    K+  DG CQGA L  L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 487  CSNGFSFPPPTLCYYRKDRCVR-CSSLVWTVTRIL 386
            CS G S   P + Y R  RC++ CS L   + R+L
Sbjct: 1024 CSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLL 1058


>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 140 HARWASPATVPWNMPPSVALTEKLTPT 220
           HA+W+  ATV +   P + + E+L  T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,650,278
Number of Sequences: 37544
Number of extensions: 377309
Number of successful extensions: 1013
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)