Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_G12
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 31 0.13
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 28 0.92
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 28 1.2
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 27 2.1
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.8
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 2.8
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 26 4.9
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 4.9
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 4.9
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.5
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 8.6
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 8.6
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.6
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 28 VMASKFKSEKVGIVGSGLIGRSWA--MLFASVGYQVTLFDVVEKQITDAIADI 180
V +S FKS K+ IVG+G +G + A +L + + ++ + D+ +K+ D+
Sbjct: 13 VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDL 65
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 28.3 bits (60), Expect = 0.92
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -3
Query: 239 SAFRFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTW---YPTEANNIAHDLPISPLP 69
SA R P F + + ++S + S S N ++ YP E N ++DLPIS
Sbjct: 361 SAGRTQFGDPDFLPLDHLDVVSKLLSKEFASQIRNNISLSKTYPWEHYNPSYDLPISHGT 420
Query: 68 TIPTFSDLNLEAMTTRSVCN 9
T + D N A++ S N
Sbjct: 421 THVSTVDSNNLAVSITSTVN 440
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 274 LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTI 387
L A + ++ +P + L KK+F+N +NVV+++++
Sbjct: 1284 LTYAFNEEKTIRASLPTLICLSKKIFENAENVVENHSL 1321
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 40 KFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVV 147
+ + + +GI+G G IG ++L ++G V +D++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 52 EKVGIVGSGLIGRSWAMLFASVGYQV 129
++VGI+G G IG+S+A +G ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEI 185
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.8
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = -3
Query: 377 SSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVPFTHWN---CSSAFRFPLRSPS 207
SST LS + ++ + + + + S TA + S P T N +SA PL S +
Sbjct: 320 SSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN 379
Query: 206 FSKVFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMT 27
+ + T S+ STTS V+ + N + LP S + + P S N T
Sbjct: 380 ST---SATSASSTPLTSANSTTSTSVS-STAPSYNTSSVLPTSSVSSTP-LSSANSTTAT 434
Query: 26 TRS 18
+ S
Sbjct: 435 SAS 437
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 55 KVGIVGSGLIGRSWAMLFASVGYQVTLFD 141
+VGI+G G +GR +A + G++V + D
Sbjct: 6 QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 52 EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADI-KVQLKTLEKDGL 216
+K+ ++G G+IG +++ +G +VT+ + + ADI K + + K G+
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISKQGI 273
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 293 SLTAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFNCTLISA 171
SL A++++ +P +CS F+ S +V C L++A
Sbjct: 9 SLEALSQNLLPGNQNHCSFDFQLKEIDDSIKQVIKCALVAA 49
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 311 NASRKIWNSKRKYSKIWTMS-SMTTLSY 391
NA RK+WN +R+Y S S T +SY
Sbjct: 36 NAIRKLWNERRRYRMPKDESISPTPISY 63
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 284 PLRMRFSYKNASRKIWNSKRKYSKIW 361
PL++ F YKN +R+ W S + +W
Sbjct: 394 PLQVAFVYKNLARR-WISLEEIENLW 418
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 218 RSPSFSKVF---NCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPT 57
R+P + K +CT ++ +A + + + + T A D I+P+PT+P+
Sbjct: 127 RNPEYIKGLCYDSCTPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIPTLPS 183
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -3
Query: 149 STTSNKVTWY-PTEANNIAH--DLPISPLPTIPTFSDLNLE 36
ST+ N+V ++ P + IA D P+S +PT PT S+ +++
Sbjct: 336 STSDNRVMFFLPWQGKVIAGTTDKPLSSVPTNPTPSEDDIQ 376
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 606 SISLDRVTGSWPISSMIALVFLVTFWF 526
+I+L TGS +S+++ L + +W+
Sbjct: 728 TIALQTATGSLKLSAIVGLTVFLQYWY 754
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 522 PRRWNYLYKWHVV 484
PR W++ YKW +V
Sbjct: 97 PRNWSHSYKWWIV 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,525
Number of Sequences: 5004
Number of extensions: 51906
Number of successful extensions: 187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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