Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G11
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    23   6.3  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    23   6.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    23   6.3  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    23   8.3  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    23   8.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    23   8.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    23   8.3  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 61   GRDGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIM 192
            G DGD    +DT L    VT    ++ S     +   T AP+ +
Sbjct: 1578 GADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTL 1621


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 135 HYSKSGNITYSQFSIDDRG 79
           H+S S  +T+  FS+D+ G
Sbjct: 304 HFSPSRYLTFEGFSVDESG 322


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 239 WCNQCCLIISAPFS--PIIIDGAFVFP 165
           W  +C LI   PFS    I +  F FP
Sbjct: 241 WKEECALISDVPFSSETTIAESEFEFP 267


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 64  RDGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEK-GADMIKQHWLHQ 240
           R G  T +VD  L     +G+      +   V  G+ N PSI + +K G   +K +    
Sbjct: 147 RKGYGTKIVDAFLHYVESSGIAKNKQILKYRVKVGSQNKPSIRLFKKLGFSQVKYNAYFD 206

Query: 241 QSEL*LV 261
             EL L+
Sbjct: 207 HVELELM 213


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 121 GLRVMDASIMPSVIRGNTNAPSIMIGEKGADMIKQHW 231
           G R   +S +P +I   T AP+++ G   +   KQ W
Sbjct: 123 GSRTRKSSGIP-IIDPVTRAPAVLAGAVSSSRAKQMW 158


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 43  YRRQRMGRDGDPTSVVDTKLRVRNVTGLRVMDASIMPSV 159
           YR++++ +  DP+SV+ + L    V  L ++   I  S+
Sbjct: 656 YRQEKISKFTDPSSVIRSDLWTVEVDHLDLLRKQIEDSI 694


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 14  SSNIAYSQFSIDDRGWAAMETQPLSS 91
           SSNI  SQF    R  AA E  P SS
Sbjct: 176 SSNIDSSQFLPVSRAIAASEISPSSS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,785
Number of Sequences: 5004
Number of extensions: 19501
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)