Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_G11
(283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 32 0.059
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 31 0.10
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 29 0.42
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 0.42
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 29 0.73
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 28 0.97
02_04_0065 + 19395599-19395748,19396079-19396168,19396255-193963... 28 1.3
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 27 1.7
01_05_0462 - 22451250-22451525,22451788-22451958,22452182-22452457 27 2.2
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 27 3.0
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858... 26 3.9
08_02_0784 + 21183223-21183654,21183892-21184065,21184158-211842... 26 5.2
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 26 5.2
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 25 6.8
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 25 9.0
07_03_0855 + 22034459-22035176,22035270-22035448 25 9.0
06_03_1346 + 29480482-29480676,29480754-29481067,29481164-294812... 25 9.0
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 25 9.0
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 25 9.0
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 32.3 bits (70), Expect = 0.059
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -2
Query: 216 HIGSFLSDHNRWSIRVSSDNRRHDTGIHYSKSGNITYSQFSIDDRGWVSIAAHP 55
H+ LSD + V D RRH H K NIT S+ S D + HP
Sbjct: 378 HLPESLSDSK---VEVGRDTRRHQKREHRKKKRNITESESSSDSEVDIDTRKHP 428
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 31.5 bits (68), Expect = 0.10
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 82 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGE-KGADMIKQHW 231
+VVD RV V GLRV+D+S N A +M+G G + K+ W
Sbjct: 533 AVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMMLGRYMGLKIQKERW 583
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 29.5 bits (63), Expect = 0.42
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 82 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGE-KGADMIKQHW 231
+VVD RV V GLRV+D+S N A +M+G G + + W
Sbjct: 534 AVVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQSERW 584
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 29.5 bits (63), Expect = 0.42
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 6 RYDQATLRTLSLVSTTEDGPRWRPN 80
+YD+ LR L ST +GP W+ N
Sbjct: 519 KYDEVLLRATGLPSTAYNGPSWQQN 543
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 28.7 bits (61), Expect = 0.73
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 82 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEK-GADMIKQHWLHQQ 243
SVVD RV V LRV+D S N A +M+G G MI + +Q
Sbjct: 527 SVVDRDFRVFRVRALRVVDGSTFRETPGTNPQATIMMMGRYIGQKMIDERHSRRQ 581
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 28.3 bits (60), Expect = 0.97
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 85 VVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 198
VVD + RV V+GLRV+D S + N A +M+G
Sbjct: 544 VVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMMG 581
>02_04_0065 +
19395599-19395748,19396079-19396168,19396255-19396329,
19396405-19396455,19404574-19404653,19404746-19404826,
19405048-19405207
Length = 228
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 245 LCWCNQCCLI 216
LCWC CCLI
Sbjct: 56 LCWCGSCCLI 65
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 85 VVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMI 219
VVD + RV V+G+RV+D S N A +M+G MI
Sbjct: 530 VVDQQHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMMGRYFGVMI 574
>01_05_0462 - 22451250-22451525,22451788-22451958,22452182-22452457
Length = 240
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 79 TSV-VDTKLRV--RNVTGLRVMDASIMPSVIRGNTNAPSIMIGEK 204
TS+ +D +LR+ + + +S P ++ G+ +P+I++G+K
Sbjct: 24 TSISLDARLRIAQESAEAPAYLHSSASPPIVHGDVKSPNILLGDK 68
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 85 VVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 198
VVD + RV V LRV+D S + N A +M+G
Sbjct: 532 VVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLG 569
>06_03_0875 -
25584789-25585307,25585424-25585570,25585734-25585897,
25586015-25586172,25586536-25586904,25586998-25587209,
25587439-25588059,25588561-25588699,25588968-25589044,
25589120-25589800,25590641-25590889
Length = 1111
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 70 GDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIM 192
G VV L++ N TGL VM AS S+I+G S +
Sbjct: 460 GHVIEVVTQSLKI-NATGLTVMQASGKSSLIKGTAIGSSYL 499
>08_02_0784 +
21183223-21183654,21183892-21184065,21184158-21184265,
21184403-21184457,21184682-21184876,21185291-21185388,
21186133-21186329,21186408-21186678
Length = 509
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 76 PTSVVDTKLRVRNVTGLRVMDASIMPSVI 162
P S +T +R+ GLR++DA++ +V+
Sbjct: 112 PESWAETDVRLMATAGLRLLDAAVAEAVL 140
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 163 RGNTNAPSIMIGEKGADMIKQHWLHQQSEL*LVS 264
RG TNA +I I + + HWLH L VS
Sbjct: 601 RGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVS 634
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 85 VVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 198
VVD RV + LRV+D S + N A +M+G
Sbjct: 525 VVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMMLG 562
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 198 SDHNRWSIR--VSSDN--RRHDTGIHYSKSGNITYSQFSIDD 85
SDHNR+ +R V SDN R++ I YS G S SI+D
Sbjct: 99 SDHNRFKVRIKVGSDNGLARNNAAI-YSGLGLDISSPSSIED 139
>07_03_0855 + 22034459-22035176,22035270-22035448
Length = 298
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 240 LVQPMLLDHIGSFLSDHNRWSIRVSSDNR 154
L P D SFL +RW +R SD R
Sbjct: 95 LADPDAADFSCSFLPSRDRWCLRHFSDGR 123
>06_03_1346 +
29480482-29480676,29480754-29481067,29481164-29481236,
29481517-29481627,29481725-29481899,29481992-29482119,
29482310-29482370,29482893-29482963
Length = 375
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 46 RRQRMGRDGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRG 168
R+Q DGD S + RVR G AS+ P + G
Sbjct: 85 RKQESESDGDSGSGEEQNKRVRRAKGKEKDVASVAPQIDSG 125
>06_02_0107 -
11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 225 LLDHIGSFLSDHNRWSIRVSSDNRRHD 145
++D I +L D + I V +NRRH+
Sbjct: 464 MIDRINLYLKDGDTLFIIVEDENRRHE 490
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 67 DGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMIKQH 228
+GD ++L ++ R+ +A++ PS+ G S +GE D++ H
Sbjct: 577 NGDGHKKTGSELLNGRLSSGRMSNAALSPSLKNGEVCTVSPSVGEWSPDLLNPH 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,117,423
Number of Sequences: 37544
Number of extensions: 121984
Number of successful extensions: 322
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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