Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G11
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    57   2e-09
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    30   0.29 
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    25   6.3  
U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical p...    25   8.4  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +1

Query: 55  RMGRDGDPTSVVDTK-LRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMIK 222
           +MG + D  +VV+ + + V     L+V+DAS+MPS++ GN NAP IM+ E+ AD+IK
Sbjct: 526 KMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLIK 582


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
            T16G12.1 protein.
          Length = 1890

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 144  TGIHYSKSGNITYSQFSIDDRGWVSIAAHPLSSI 43
            TG     +G+ ++++ + DD+ W SI A  LS++
Sbjct: 1536 TGYRVDNAGSTSFARINYDDKSWYSIQAQLLSNM 1569


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 198 SDHNRWSIRVSSDNRRHDTGIHYSKSGNITYSQ 100
           S H+    R+++ N  ++   ++SK+ NI Y+Q
Sbjct: 77  SSHSSGPARLNNMNNNNNNNHNHSKNNNIQYTQ 109


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 174 ECSIYYDRRERSRYDQATLVAPTERTITCKFSF 272
           EC  YY  R+ + Y Q  +V  TE+ +   + F
Sbjct: 78  ECHEYYSGRKTAPYCQRIIVMETEKDMQYVYQF 110


>U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical
           protein C56C10.11 protein.
          Length = 753

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 281 LSAEGKLTSYSSLCWCNQCCLIISAPFSPI 192
           LS   ++ S   + W   CC ++  PFS +
Sbjct: 371 LSNPVEMVSVIQVIWRKICCFVVREPFSEV 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,112,219
Number of Sequences: 27780
Number of extensions: 107478
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)