Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G10
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049     26   3.6  
05_07_0049 - 27327804-27328400                                         25   6.3  

>07_03_0689 +
          20711313-20711906,20713224-20713860,20713946-20714049
          Length = 444

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 96 LVPNSCSPGDPLVLERPPP 40
          L P SC+PG P  L  P P
Sbjct: 39 LTPPSCTPGTPAALPSPGP 57


>05_07_0049 - 27327804-27328400
          Length = 198

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 6  LTKGNKSWSSTAVAAALELVD 68
          L  G+ SW+S + AAA EL+D
Sbjct: 15 LRHGSLSWASFSAAAAEELID 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,030,016
Number of Sequences: 37544
Number of extensions: 53452
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)