Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G10
         (153 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical
          protein W01C9.3 protein.
          Length = 792

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 72 GDPLVLERPPPR 37
          GDP+V ++PPPR
Sbjct: 58 GDPIVQKQPPPR 69


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 93   VPNSCSPGDPLVLE 52
            +PN C  G+PL LE
Sbjct: 1270 IPNMCGTGEPLALE 1283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,782
Number of Sequences: 27780
Number of extensions: 36868
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)