Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_G09
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 53 2e-07
04_03_0649 - 18402976-18403220,18403305-18404499 42 3e-04
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.35
12_02_0239 - 16125105-16126025,16126966-16127415 31 1.1
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 1.4
05_03_0086 + 8279518-8280320,8280923-8281844 30 1.4
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 3.3
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 3.3
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 4.3
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 5.7
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 28 5.7
12_02_0292 + 16979550-16980662,16983249-16983731 28 7.6
05_03_0191 - 9521496-9521921 28 7.6
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 28 7.6
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 53.2 bits (122), Expect = 2e-07
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 2/205 (0%)
Frame = +1
Query: 40 LRVFLTVGGDDDTEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRK 213
++ L++G D+ ED ++ + R AF NS++ LA GFDG+DL+W+ P +
Sbjct: 109 VKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFPATQ 168
Query: 214 PKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLP 393
++G + + +E E T + L + + +
Sbjct: 169 LD--MENLGDL------------LAEWRAEIMEDSTT---RSTEPLLLTATVYFSNHLFG 211
Query: 394 NVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPXEADYTAPIYAPQNRDPLQNADAAIN 573
++++ + + + + +D VNI F + N AD AP+Y ++D +A +
Sbjct: 212 MADTNLNYPIDDMSSSLDWVNIITFSLH-KNSNVTTAD--APLY---DKDSHFSASYGVI 265
Query: 574 YWIQNGAPTHKVVLGISTTGRTWKL 648
W+ G P K+V+GI GR+W L
Sbjct: 266 SWLDAGLPPCKLVMGIPLFGRSWFL 290
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 418 DVPS--IINLVDIVNIQAFDYYTP-ERNPXEADYTAPIYAPQNRDPLQNADAAINYWIQN 588
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 589 GAPTHKVVLGISTTGRTWKL 648
G P KVV+GI GR+W L
Sbjct: 272 GVPASKVVMGIPLYGRSWFL 291
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 82 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 204
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 325 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 450
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 235 IGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 414
+G + + + T V + + E LVR+ K + + NMQL++ V+P Y
Sbjct: 310 LGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPY 369
Query: 415 FDVPSIINLVDI 450
V I DI
Sbjct: 370 IKVQRIFETCDI 381
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 136 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 249
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 100 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGT 276
LL++ P R AFT A + + FDG+ +W L + P + + F T
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASAT 534
Query: 277 TPVDDKESEH 306
TP D K E+
Sbjct: 535 TPKDKKPPEN 544
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 325 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 450
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 542 ILYKTPTLL*ITGFKMVRLPTKLSLVSAPLDVRGSSI 652
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +1
Query: 25 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 204
R P L + + D D +YNLL + A +Y FDG L L
Sbjct: 5215 RMSPILNMVIEPSFDFDDPPTHQYNLLEPTSIITRKHVLGAHTWDHEYNFDGASLEKTLV 5274
Query: 205 KRKPKK-IRSSIGSFWHSIKKT 267
KP K +++ F +KK+
Sbjct: 5275 LHKPTKCFEATLVEFSKDMKKS 5296
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 325 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 450
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +1
Query: 280 PVDDKESEHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 432
P+ EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 660 PLVTARPEHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 600 PQSCPWYQHHWTYVEARFR 656
P++ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 588 WCAYPQSCPWYQHHWTYVEARFR 656
W P++ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 424 PSIINLVDIVNIQAFDYYTPERNPXEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTH 603
PS + VD N + D +PE N D Y+ DP N +A + I N +
Sbjct: 767 PSRSDPVDCSNDMSSDSLSPENNETADDVLVEGYSVAIVDPCSNEKSAYHAHIPNDVANN 826
Query: 604 KV 609
+V
Sbjct: 827 EV 828
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,640
Number of Sequences: 37544
Number of extensions: 323891
Number of successful extensions: 979
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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