Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_G07
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 29 0.71
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 1.6
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 2.2
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 27 2.2
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 27 2.8
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 3.8
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 5.0
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 5.0
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 26 5.0
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 5.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.6
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 8.7
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 8.7
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 8.7
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.7
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.71
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 189 YEFVTPLTSLVVVKPNE--TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLP 362
Y + + + +V+ N+ T+ + E ++PA +++ S+P Y IS+ R T+ L SLP
Sbjct: 483 YGHTSTIRCIKIVQGNQSTTDTDDVEKENRPASNDAN--SMPPYIISSSRDCTIRLWSLP 540
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 189 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISN 326
Y F+T L+ ++++ +E + + +++P S VPVY IS+
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISD 603
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 462 SYADVSDRVEFESYDDDVPPVKWPSSTPLTTPVVLIPGLYTYHLEDYSLT 611
SY D V F DD P+ WP S L + GL T+ + S T
Sbjct: 28 SYPDSDFLVTFNGEDDPEKPLNWPVSIKLLNTALY--GLTTFAAQFNSTT 75
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 309 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 205
+GP+ + I + PV +H+F L L+P SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 350 AITPKSAINRRYFVPIPTIIYTSSTLFYGATATRFIL 460
AI S N RYF PT+ ++ LF +++L
Sbjct: 195 AIHNLSKFNHRYFTKYPTVFLSAGPLFLSYQFCKYLL 231
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 429 SMARPQLASFSSYADVSDRVEFESYDDDVPPVKW 530
+ + P+ +SF + V+F + D P VKW
Sbjct: 163 TQSHPRASSFVDKIAAATTVQFRNLQTDAPSVKW 196
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 183 LKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDI----SNVRPGTVAL 350
L Y+F+ +T VV P + ++ SSF V +Y I +V G VA+
Sbjct: 134 LVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIFATSKDVSIGPVAV 193
Query: 351 QSLPSPQLTAD 383
SL + ++ A+
Sbjct: 194 MSLVTSKVIAN 204
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 373 NCGLGSDCRATVPGLTLEISYTGTD 299
NC + + G+TLE++Y TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 543 ALN*AISQEVRHHHNFQIQPCLRHQRTRRMKRVAV 439
A+N AI + ++NF+I + H R R+ KRVA+
Sbjct: 61 AINEAIKL-LPQNYNFEIHKTIWHIRLRKAKRVAL 94
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 312 YDISNVRPGTVALQSLPSPQL 374
Y NVR ++ LQSLP+P L
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTL 463
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 258 ESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPS 365
E +D P +E S S+P+ D+SN G + + PS
Sbjct: 941 EDIDVP-LREGSLTSIPIDDVSN--SGDITMGEEPS 973
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 344 YGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFI 234
Y + V NI + +LK+ I+ F + CIRFI
Sbjct: 682 YSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFI 718
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 249 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 94
L+ + ++ P+ S ++ S+ K SF FP SC + + + P+I
Sbjct: 27 LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 352 NHSQVRN*PQILRTNTNHYLYQLNT 426
NH QV N P++LRT+ + ++ N+
Sbjct: 512 NHLQVCNLPELLRTSNSFGIWLFNS 536
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 249 VNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 389
V+ +D P+ E+ F+ + V + +V + + PSP L++ S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPAS 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,020
Number of Sequences: 5004
Number of extensions: 50169
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -