Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G03
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0648 + 25873779-25874279,25874418-25875548                       28   2.0  
12_01_0036 - 299140-299190,300001-300078,300202-300205,300657-30...    27   6.1  
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206...    27   6.1  

>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 173 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 304
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>12_01_0036 -
           299140-299190,300001-300078,300202-300205,300657-300757,
           301636-302145,302552-303034,303672-304163
          Length = 572

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 72  LVLPXXGVNSXVRAG*RA*ILHRTVRGTAGAV 167
           + LP   +N  V AG  A I+H   RG+ G++
Sbjct: 331 VALPLGVLNGAVNAGVAAGIIHPLARGSTGSI 362


>11_01_0277 +
           2060328-2061061,2061360-2061420,2061560-2061679,
           2061947-2062112,2062229-2062635
          Length = 495

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 178 RVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQI 312
           RVRR+  +    +DG      K  I+GN N      G ++   Q+
Sbjct: 259 RVRREKKQQEARNDGLDAQATKDNISGNNNRDFEQHGVINTFTQL 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,740,895
Number of Sequences: 37544
Number of extensions: 122208
Number of successful extensions: 263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)