Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G02
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.57 
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   2.3  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    26   4.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   5.3  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    26   5.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.0  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   9.2  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   9.2  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 363 WYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALY 482
           ++ TW +++ D L   V  +D     KL  ++ N  +A+Y
Sbjct: 60  FHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIY 99


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 159 PGLTSEAQLRYLLQWFGEFSE--LQREDFL 242
           PG T+   LRY+++  G+FS   L+R  FL
Sbjct: 361 PGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 FGEFSELQREDFLPVLAAARRHEPDQLA 287
           FGE SE  RED+L  L        +Q A
Sbjct: 78  FGEMSEFHREDYLDFLKRVTPDNAEQFA 105


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 535 KKIPLKILLVMEYLKKTYPLKLQQHLRSNI 624
           K++P+ +  ++ YL   YP      +R NI
Sbjct: 465 KRVPIIVSTILSYLDLLYPTLASDEVRQNI 494


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = -1

Query: 373 VGYQSLNNLIRH*NKLTGLSSQHMLAIAIASWSGSCLRAAASTGRKSSLCNSLNSPNHWR 194
           VG     +++   N+  GL S+   ++   + +G C    ++  +  SLC +L + N+++
Sbjct: 81  VGQDKFADMLLESNEKAGLRSE--FSVDPTTPTGVCAVVLSNNNKNRSLCTNLGAANNYK 138


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 501 YPTYVENGEACKEDTVEN--SVGHGVSQENIPV 593
           YPTY+ NG +  +    N  +V +G +   IPV
Sbjct: 354 YPTYMSNGRSANQSPRNNPQNVNNGSTPIQIPV 386


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 543 YLLYTLPHFQHK*GKNLFY 487
           YL+YT  HFQ K    LF+
Sbjct: 49  YLIYTGEHFQEKQATELFF 67


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 207 QTIGGDTLAVLQKLGLVLT 151
           +TI GD +AVL+KLG + T
Sbjct: 62  KTIEGDVVAVLKKLGYLKT 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,959
Number of Sequences: 5004
Number of extensions: 51027
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)