Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_G02
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 34 0.11
01_06_0482 - 29672720-29673854,29673941-29676267 32 0.44
12_01_0243 + 1816725-1816883,1816992-1817114,1817227-1817313,181... 30 1.8
11_01_0246 + 1887680-1887838,1887942-1888064,1888177-1888263,188... 30 1.8
03_06_0089 - 31565454-31565517,31565594-31565618,31565743-315659... 29 4.1
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 4.1
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 28 7.2
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 33.9 bits (74), Expect = 0.11
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +3
Query: 294 MASMCCEDKPVSLFQCRIKLFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTE 473
+ S +KPV+ I+ D T +EE++ +L +EM+A TK ++++A+ E
Sbjct: 562 LKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEA---TKAENMIAHKDE 618
Query: 474 ALYNGKKDFYPTYVEN---GEACKEDTVENSVGHGV 572
K+ ++ T E +A KE T + GV
Sbjct: 619 IYSRPKRTWFATEKEKKLLAKAAKESTSQGKSNSGV 654
>01_06_0482 - 29672720-29673854,29673941-29676267
Length = 1153
Score = 31.9 bits (69), Expect = 0.44
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 361 SLNNLIRH*NKLTGLSSQHMLAIAIASWSGSCLRAAASTGRKSSLC-NSLNSPNH-WRRY 188
S+ N RH +L SS L + +S S S AAAST SS SL + +H RR
Sbjct: 56 SVANQARHKPRLKPSSSTRKLLPSASSSSSSSAAAAASTSSSSSFWKKSLTAISHLGRRR 115
Query: 187 LSCA 176
L CA
Sbjct: 116 LDCA 119
>12_01_0243 +
1816725-1816883,1816992-1817114,1817227-1817313,
1817442-1817546,1817744-1817905,1818473-1818508,
1818637-1818708,1819285-1819562,1820275-1820509
Length = 418
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 171 SEAQLRYLL--QWFGEFSE-LQREDFLPVLAAARRHEPDQLAIAMA-SMCCEDK 320
S A L+YLL + GE +E + +ED +PVL A++ H + ++I A + ED+
Sbjct: 86 STANLKYLLVPYYLGEMTERVAQEDRIPVLKASQDHLKEFISICEALELISEDE 139
>11_01_0246 +
1887680-1887838,1887942-1888064,1888177-1888263,
1888401-1888505,1888693-1888854,1889429-1889464,
1889594-1889665,1890270-1890414,1891213-1891505
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 171 SEAQLRYLL--QWFGEFSE-LQREDFLPVLAAARRHEPDQLAIAMA-SMCCEDK 320
S A L+YLL + GE +E + +ED +PVL A++ H + ++I A + ED+
Sbjct: 86 STANLKYLLVPYYLGEMTERVAQEDRIPVLKASQDHLKEFISICEALELISEDE 139
>03_06_0089 -
31565454-31565517,31565594-31565618,31565743-31565927,
31566302-31566405,31567148-31567366,31567721-31567903
Length = 259
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 435 GTKLQDVMANGT---EALYNGKKDFYPTYVENGEACKE 539
G L+D+ AN T EAL NGK Y + E C+E
Sbjct: 119 GVSLKDLAANATPYEEALSNGKPTVVEFYADWCEVCRE 156
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +3
Query: 315 DKPVSLFQCRIKLFNDWYPTWSEEEQDRLVLAVSEMDAEFGTKLQDVMANGTEALYNGKK 494
+ P+ R KL ND Y T + E D +L + M + A EAL KK
Sbjct: 237 EHPMDFSTIREKLLNDSYTTLEQFENDVFLLTSNAMSYNSDDTVYYRQARSIEAL--AKK 294
Query: 495 DF 500
DF
Sbjct: 295 DF 296
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 399 LVLAVSEMDAEFGTKLQDVMANGTEALYNGKKDFYPTYVENGEACKEDTVEN 554
+ L +E+D +F LQD++ GT L PTY E E CK E+
Sbjct: 438 MYLVPTEVDPQFAQNLQDLLLEGTALL--------PTY-EKPEICKHTASED 480
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,924
Number of Sequences: 37544
Number of extensions: 311782
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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