Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G02
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL137227-10|CAB76717.1|  391|Caenorhabditis elegans Hypothetical...    27   8.6  
AL132848-6|CAB76731.1|  391|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 213  FSELQREDFLPVLAAARRHEPDQLAIAMASMCCE-DKPV-SLFQCRIKLFNDWYPTWSEE 386
            F++L +    P +     +  D L +++AS   +  KP+ +L + R K FND Y +W ++
Sbjct: 1854 FNDLSQYPVFPWILT--NYTSDTLDLSVASNFRDLSKPIGALSEARRKFFNDRYTSWDDD 1911

Query: 387  E 389
            +
Sbjct: 1912 Q 1912


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 213  FSELQREDFLPVLAAARRHEPDQLAIAMASMCCE-DKPV-SLFQCRIKLFNDWYPTWSEE 386
            F++L +    P +     +  D L +++AS   +  KP+ +L + R K FND Y +W ++
Sbjct: 1854 FNDLSQYPVFPWILT--NYTSDTLDLSVASNFRDLSKPIGALSEARRKFFNDRYTSWDDD 1911

Query: 387  E 389
            +
Sbjct: 1912 Q 1912


>AL137227-10|CAB76717.1|  391|Caenorhabditis elegans Hypothetical
           protein F58D5.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 620 LDLRCCCNFNGYVFLRYSMT-NRIFNGIFFTRFPIFNISRVKI 495
           L++R CC +     L+     N + NG++F  F  F+  R +I
Sbjct: 146 LNIRFCCKYEDPTVLKAVFEQNLLINGVYFQSFKYFDDYRSQI 188


>AL132848-6|CAB76731.1|  391|Caenorhabditis elegans Hypothetical
           protein F58D5.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 620 LDLRCCCNFNGYVFLRYSMT-NRIFNGIFFTRFPIFNISRVKI 495
           L++R CC +     L+     N + NG++F  F  F+  R +I
Sbjct: 146 LNIRFCCKYEDPTVLKAVFEQNLLINGVYFQSFKYFDDYRSQI 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,300
Number of Sequences: 27780
Number of extensions: 279935
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)