Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G01
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558     30   2.0  
11_06_0588 + 25272067-25274850                                         29   4.5  
01_06_1620 + 38697960-38698131,38698532-38700732                       28   6.0  
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191...    28   7.9  

>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
          Length = 852

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 355 LGNHFYNVTRTNVKQALHLQRDINRCLSQYEE 260
           L +H++N     ++QA+ L RD   C+ QY +
Sbjct: 63  LDHHYHNQCTPWIRQAMELARDCQDCVEQYAQ 94


>11_06_0588 + 25272067-25274850
          Length = 927

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 355 LGNHFYNVTRTNVKQALHLQRDINRCLSQYEE 260
           L  H YN     +KQA+ L  D   C+ QY +
Sbjct: 64  LDRHHYNKCAPWIKQAVELAHDCQDCVEQYAQ 95


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 124 LESDDSK*TYYIVLWPATSLVWNSDNY 44
           ++ D S  T YI+LW ++S+ W S N+
Sbjct: 197 IQLDPSGATQYILLWNSSSVYWASGNW 223


>02_04_0231 +
           21117887-21117935,21118710-21118825,21119049-21119144,
           21119276-21119332,21119547-21119699,21119801-21119885,
           21120022-21120139,21120278-21120442,21120795-21120914,
           21121006-21121081,21121247-21121418,21121574-21122049,
           21122130-21122320,21124348-21124583,21125799-21125959
          Length = 756

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 418 QSEPVTFTAKAISVGLELGRKLGN---HFYNVTRTNVKQALHLQRDINRCLSQYEEVYKD 248
           QS  V    K I  G+ +GR +     H Y+  R  +++   +Q +++  L +++ VY D
Sbjct: 552 QSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTD 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,101
Number of Sequences: 37544
Number of extensions: 241987
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)