Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G01
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical
           protein F25B5.6c protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 467 IQFGHRPIFQQHFSNSFSKFFHLYTILKRNH 559
           IQ   +P+ +Q F+    +FFH+Y I+KR H
Sbjct: 106 IQVDGQPVSEQMFAE---EFFHVYDIIKREH 133


>U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical
           protein F25B5.6a protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 467 IQFGHRPIFQQHFSNSFSKFFHLYTILKRNH 559
           IQ   +P+ +Q F+    +FFH+Y I+KR H
Sbjct: 132 IQVDGQPVSEQMFAE---EFFHVYDIIKREH 159


>U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical
           protein F25B5.6b protein.
          Length = 521

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 467 IQFGHRPIFQQHFSNSFSKFFHLYTILKRNH 559
           IQ   +P+ +Q F+    +FFH+Y I+KR H
Sbjct: 143 IQVDGQPVSEQMFAE---EFFHVYDIIKREH 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,185
Number of Sequences: 27780
Number of extensions: 250351
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)