Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_G01
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.38 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 82  WPATSLVWNSDNYILIDSLYSPS 14
           W    L WN D+Y  +D+L+ PS
Sbjct: 77  WNDYKLKWNPDDYGGVDTLHVPS 99


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 82  WPATSLVWNSDNYILIDSLYSPS 14
           W    L WN + Y  ++ LY PS
Sbjct: 90  WNDYKLKWNPEEYGGVEMLYVPS 112


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 201 IQEESVINNYVGYVA 245
           + E +V+NNY+G VA
Sbjct: 291 LMEFAVVNNYMGPVA 305


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 117 LSRITSLFSCHFHLHLSIPFASWFSSR 197
           L  +T +    FH  +++P   WF +R
Sbjct: 314 LYMVTVILGLLFHALITLPTIFWFLTR 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,051
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)