Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F23
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   6.6  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.6  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    24   8.7  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   8.7  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    24   8.7  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 420 ICSRTRSVHQRAPL 379
           +C +TRS HQ+ PL
Sbjct: 421 VCGKTRSPHQKKPL 434


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 424 EYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLDFTAG 287
           E++  +  G S+++   +F   N   L   L+LF +PS+    TAG
Sbjct: 223 EFLLPNLFGNSSTSPQDNFGTSNSA-LSRNLDLFGSPSSENKSTAG 267


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 234 QVLGSQEDFMKGVSNLCQPA 293
           QVLG  +DF     NL  PA
Sbjct: 33  QVLGCSDDFFASCENLINPA 52


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 298 FTAGWHKFDTPFMKSSWEPSTWFS 227
           F+AG+  F+T   K  W+P +W S
Sbjct: 60  FSAGY--FNTVGSKEGWQPKSWKS 81


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 415 FKDKIGASASAAHTDFFNKNDYNLGG 338
           F+D+   S   AH    N ND+N+ G
Sbjct: 370 FEDRTHLSDHGAHFHLGNANDFNMQG 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,039
Number of Sequences: 5004
Number of extensions: 25465
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)