Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_F21
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 29 0.25
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 28 0.58
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 28 0.58
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 27 1.8
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 26 2.3
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 2.3
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 5.4
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.4
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 7.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 7.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 24 9.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 9.4
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 24 9.4
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 24 9.4
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 24 9.4
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 29.5 bits (63), Expect = 0.25
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 45 LYTAVVRPIITYACVVWSKKAQQQSVCTRLASVQRIASILV 167
LYT +RP+ YA +++ + Q S+ RL ++ R +I V
Sbjct: 534 LYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAV 574
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 0.58
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 305 GYPLSPPEGVHSVHRQPRH 249
G P SP E + S+H PRH
Sbjct: 250 GIPDSPSEAIKSIHNNPRH 268
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 28.3 bits (60), Expect = 0.58
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 321 KISWTGISIVSSRGRTFCASSTSPPSLHV--DVGASDLTEHPEPLQG 187
++S+TG S SS+GR+ P + + D ASDL E+ E L+G
Sbjct: 3 QLSFTGKS--SSKGRSRLTQEVRPTASQIIADEEASDLDEYEEDLEG 47
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 129 RLASVQRIASILVTGAMSTAPGAALDALLNLTPLHLHVEKVAR 257
R+ + +R +S+ + G + L N LHLHVE + R
Sbjct: 111 RILAGKRYSSLQIGSVFILTIGVIIATLGNAKDLHLHVESMTR 153
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 14 LGFTSQANHMALYGSCQTHNNIRLCGLVQKGT 109
+G T A+ A Y + HN + +CG + GT
Sbjct: 243 VGSTLSADVFARYHRARNHNTLYICGTDEYGT 274
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 24 HPRLTIWLYTAVVRPIITYACVVWSKKAQQQSVCTRLASVQRIASIL 164
HP +I YT + R + A V+W++ + + V R A+V+ + S L
Sbjct: 143 HPNRSI--YTQLPRNEFSNARVLWNRLSARDRVLWRWANVENLDSFL 187
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = -2
Query: 304 DIHCL-LPRAYILCIVNLA-TFSTC 236
++H + + RAYI CI+++A +FS C
Sbjct: 270 ELHTMPIKRAYIYCIISVAISFSIC 294
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = -2
Query: 304 DIHCL-LPRAYILCIVNLA-TFSTC 236
++H + + RAYI CI+++A +FS C
Sbjct: 270 ELHTMPIKRAYIYCIISVAISFSIC 294
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -3
Query: 282 GRTFCASSTSPPSLHVDVGASDLTEHPEPLQGLSTWLLSLR*KLFFVLKLIGYKQTAVVP 103
G FC + P HVD +L++ +PL+ + + + F++ I Y+ A +
Sbjct: 143 GDYFCIGVAAYPEGHVDSNVPELSK--DPLRDIPFLIEKVEAGADFIITQIFYEPEAFIK 200
Query: 102 F 100
F
Sbjct: 201 F 201
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 276 TFCASSTSPPSLHVDVGASDLTEHPEPLQGLSTW 175
TF S L++ D +H E L G+S+W
Sbjct: 56 TFPVSDRKDALLNIPTVVDDEFQHTEELAGVSSW 89
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 114 QSVCTRLASVQRIASILVTGAMSTAPGAALDALLNLTPLHLH 239
Q +C R SV A +L G+ + P + L LHLH
Sbjct: 740 QCICVRTLSVPIGAGMLTYGSKNPLPTEKVTPRLFNFTLHLH 781
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 231 HLHVEKVARLTMHRMYALGRRQWISQSMRSFLDSVIETPILGMISDMMIP 380
H+ +A T+ R A G +++ M L T +LG IS M+P
Sbjct: 475 HMAPSALAAATLVRYSASGGISMVARPMYLNLGDHWATSVLGFISVAMVP 524
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 164 SDRSHVDSPWSGSGCSVKSDAPTSTCREGGEVDDAQNVRP 283
S +S SP G K+ + S +GG DD NV+P
Sbjct: 124 SKKSRYSSP---DGVLAKTASFLSVLSDGGYEDDVMNVKP 160
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 293 SPPEGVHSVHRQP 255
+PP VHS H+QP
Sbjct: 76 NPPPSVHSSHKQP 88
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/46 (21%), Positives = 22/46 (47%)
Frame = +3
Query: 276 YALGRRQWISQSMRSFLDSVIETPILGMISDMMIPETNLRKLYDVE 413
+ L ++W S +E + G+I D + P T +++ D++
Sbjct: 37 FGLQAKRWNSTQQNDSSIDCLEPKLQGIIEDNISPSTAQKEISDIK 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,711
Number of Sequences: 5004
Number of extensions: 39584
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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