Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_F21
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831... 29 1.3
07_01_0939 + 7939716-7940220,7940675-7941564 29 1.3
06_02_0349 + 15032131-15033117 29 1.7
02_05_0864 - 32319266-32319517,32320139-32320767,32321106-323211... 29 2.3
10_01_0208 - 2228234-2228254,2228494-2228709,2228796-2228946,222... 28 3.0
07_03_1721 - 29023979-29025295 28 3.0
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898... 28 4.0
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 28 4.0
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 28 4.0
03_02_0943 + 12598616-12598789,12599790-12601250 27 5.3
10_07_0073 + 12616193-12616454,12616533-12616754,12616923-126170... 27 7.0
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 27 9.2
>07_03_0153 -
14481421-14481506,14481933-14482111,14483046-14483130,
14483301-14483499,14484222-14484292,14484380-14484486,
14484571-14484703,14484870-14485020,14485147-14485249,
14485330-14485438,14485587-14485746,14486293-14486394,
14486892-14487009,14487596-14487750,14487850-14487948,
14488078-14488167
Length = 648
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 164 SDRSHVDSPWSGSGCSVKSDAPTSTCREGGEVDDAQNVRP 283
SD S DSPWS S D + + + GE DA++ P
Sbjct: 10 SDLSADDSPWSEGSWSDDDDEGSLSFEDSGEGSDAESDEP 49
>07_01_0939 + 7939716-7940220,7940675-7941564
Length = 464
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/107 (20%), Positives = 47/107 (43%)
Frame = +3
Query: 60 VRPIITYACVVWSKKAQQQSVCTRLASVQRIASILVTGAMSTAPGAALDALLNLTPLHLH 239
+ I+ + + + ++ + ++ +R A +++ A+ A AA + L L + LH
Sbjct: 86 IAKIMALNAAIEASGCARDALASLMSGPERPACLVIDAALPGAQKAAAE--LGLPTIVLH 143
Query: 240 VEKVARLTMHRMYALGRRQWISQSMRSFLDSVIETPILGMISDMMIP 380
A + R YA+ R + + S L+ +E +SD+ P
Sbjct: 144 TGSAAAFRLFRSYAMLREKGYLPAKESELNRPVEEMPPLRVSDLFDP 190
>06_02_0349 + 15032131-15033117
Length = 328
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -2
Query: 241 TCRCRGVRFNRASRAAPGAVDMAPVTKIEAILCTEANRVQTDCCCAFLDQTTQAYVIMGL 62
T RC R R A G PVT+ +C +A TDC A + V +G
Sbjct: 230 TTRCLQCEDRR--RGAGGTCGFDPVTRDFVCICNDARNSTTDCAGALAKFSPIQSVFIGQ 287
Query: 61 TTA 53
T++
Sbjct: 288 TSS 290
>02_05_0864 -
32319266-32319517,32320139-32320767,32321106-32321139,
32321234-32321427,32322044-32322383
Length = 482
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 192 GAALDALLNLTPLHLHVEKVARLTMHRMYALGRRQWISQSMRSFLDSVIETPI 350
G AL A+L T L LH E+ +H +Y G+ + + + F+D + TP+
Sbjct: 307 GGAL-AILFPTVLALHGEEDMLARLHGVYTFGQPRVGDEGLCRFMDGHLATPV 358
>10_01_0208 -
2228234-2228254,2228494-2228709,2228796-2228946,
2229031-2229268,2229394-2229604,2229765-2229943,
2230041-2230151,2230445-2231240
Length = 640
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = +2
Query: 17 GFTSQANHMALYGSCQTHNNIRLCGLVQKGTTAVCLYPISFSTKNSFYLSDRSHVD 184
GF N + L Q N +RL G +G + +Y + FY+ D D
Sbjct: 383 GFLEFKNEVQLIAKLQHRNLVRLLGCCSQGEEKILVYEYLPNKSLDFYIFDERKKD 438
>07_03_1721 - 29023979-29025295
Length = 438
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 185 SPWSGSGCSVKSDAP--TSTCREGG 253
SPW CSV + +P TSTC + G
Sbjct: 321 SPWIQPNCSVSASSPTSTSTCSDNG 345
>07_03_0436 -
18188221-18188373,18189121-18189233,18189817-18189889,
18189979-18190046,18190132-18190372,18191614-18191732,
18192977-18193028,18193178-18193192
Length = 277
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 179 VDSPWSGSGCSVKSDAPTSTCREGGEVDDAQN 274
V SPWSG +D+ S R GG A+N
Sbjct: 166 VSSPWSGGALVENNDSSASRKRRGGPDGMAEN 197
>06_03_1490 + 30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 315 RSFLDSVIETPILGMISDMMIPETNLRK-LYDVEIP 419
+ F DSV TP+ + D +P T ++K ++D +P
Sbjct: 929 KPFFDSVPGTPLQKSVFDYSVPSTPMQKSVFDYSVP 964
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 27.9 bits (59), Expect = 4.0
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 113 AVCLYPISFSTKNSFYLSDRSHVDSPWSGSGCSVKSDAPTSTCREGG-EVDDAQNVRPRE 289
AVC+ ++ SF + SH +P S SG S C++ G E DDA V E
Sbjct: 218 AVCVVESTWDILRSFAPEEDSHAHAPASRSG-------GDSACQDAGEEEDDAAAVLTLE 270
Query: 290 ETMDIPVHEIFLRLSDRNTNFRDD 361
E E F S +T D+
Sbjct: 271 ELRLGETSEEFTGTSSLSTTNDDE 294
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 252 PPSLHVDVGASDLTEHPEPLQG 187
P ++++D+ L EHP+PL G
Sbjct: 139 PENVNIDMDMEGLDEHPQPLSG 160
>10_07_0073 +
12616193-12616454,12616533-12616754,12616923-12617074,
12617252-12617821
Length = 401
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 106 AFLDQTTQAYVIMGLTTAV*SHMVSLGCKPQ 14
A + T + G TT V M+ LGC+PQ
Sbjct: 205 AAIRSTVNEVIAAGATTVVVPGMIPLGCEPQ 235
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 224 APTSTCREGGEVDDAQNVRPREETMDIPVHEIFLRLSDRNTNFRDDI 364
AP + C EGG+V A +V + + + E+F+R + F+D +
Sbjct: 1116 APRNECSEGGQVSTASDV----FSFGVVLLELFIRRRPTDDMFKDGL 1158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,648
Number of Sequences: 37544
Number of extensions: 284214
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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