Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F19
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   0.63 
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.6  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   3.4  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   4.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   5.9  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   5.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    24   7.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   7.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   7.8  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    24   7.8  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    24   7.8  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 4   NRHGATLTNTHIP-GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 174
           N+   T T+T    G GDK S AGK N+   +    S  +    +    S+ PS N+V
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 105 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 4
           I  V +  + F ++      S N+SV EGSS+ +
Sbjct: 73  IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +1

Query: 46  IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 225
           I    ++ G   L  NN       AF + +  T +   S++++  GL+ + K        
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256

Query: 226 AAHTDFFNKN 255
           +  T FF +N
Sbjct: 257 SNATSFFGEN 266


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 187 EYMFKDKIGASASAAHTDFFNKNDYXLGGKLNLFKTPSTSLDFTAG 324
           E++  +  G S+++   +F   N   L   L+LF +PS+    TAG
Sbjct: 223 EFLLPNLFGNSSTSPQDNFGTSNS-ALSRNLDLFGSPSSENKSTAG 267


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 140 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 232
           P F      +     + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 110 PRRRSRPEICPPFPI 154
           PRRR RP   PP PI
Sbjct: 100 PRRRGRPRKYPPKPI 114


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = +1

Query: 79  NLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 174
           ++ H + H L++ +F+T+ + T   + ++ T+
Sbjct: 431 SILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 196 TYIRDHHQQCWLMVNGKWWA 137
           TY+      CW  +   WWA
Sbjct: 756 TYVYSSTMLCWQRITEPWWA 775


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 377 QVLGSQEDFMKGVSNLCQPA 318
           QVLG  +DF     NL  PA
Sbjct: 33  QVLGCSDDFFASCENLINPA 52


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 152  IYHQPTLLVVVSNICSRTRSVHQ 220
            +YHQ TL  +   ICS+ ++V Q
Sbjct: 2124 LYHQLTLYQLQDLICSKCKTVKQ 2146


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 313 FTAGWHKFDTPFMKSSWEPSTWFS 384
           F+AG+  F+T   K  W+P +W S
Sbjct: 60  FSAGY--FNTVGSKEGWQPKSWKS 81


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 401 RKVLDN--ENQVLGSQEDFMKGVSNLCQPAVKSSDVDGVLNRFSLPP 267
           RKV+ N     ++ S+E+F++ ++ L Q   ++S+V       ++PP
Sbjct: 169 RKVMSNFTAGDIVRSEEEFLEILAKLEQQEKEASNVSEASRIATIPP 215


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 131 EICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLT 250
           EICP      Q   L     +C R   +H+   L+ +S+T
Sbjct: 655 EICPVTYSIEQEKKLEKYKRVCLRGLDIHRNRRLSQLSVT 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,962
Number of Sequences: 5004
Number of extensions: 38657
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)