Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F19
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    27   6.8  
U21318-1|AAC46669.1|  457|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    26   9.0  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    26   9.0  

>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 139 PTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDF 243
           P +    S      GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 333 VRYALHEVLLGTQHLVFI 386
           +++A+HE+L+G  H +FI
Sbjct: 244 IQFAVHEILMGIPHCMFI 261


>U21318-1|AAC46669.1|  457|Caenorhabditis elegans Hypothetical
           protein K03H9.3 protein.
          Length = 457

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  TSNRQFISNSRNMSVCEGSSVAVD 1
           T+N  FIS ++N+S+C    +A D
Sbjct: 165 TANATFISIAKNLSICSTECIAKD 188


>Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.2 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  CFITTTMIYPRRRSRPEICPPFPIYHQ 163
           CF+  T  YPR++S  +I    P+YH+
Sbjct: 72  CFLKDTYFYPRQQSMTDI----PMYHK 94


>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  CFITTTMIYPRRRSRPEICPPFPIYHQ 163
           CF+  T  YPR++S  +I    P+YH+
Sbjct: 72  CFLKDTYFYPRQQSMTDI----PMYHK 94


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
 Frame = +1

Query: 70  GKVNLFHNNDHDLSAKAFATRNMPT----------ISHLPSTNTVGGGLEYMFKDKIGAS 219
           G+ +  H+N+H++  K +++   PT          +  +P+T+TVG     +F  KIG  
Sbjct: 295 GRTSQNHSNEHEM--KEYSSYKSPTKQLVHSIHKSLQCIPATSTVGDANIDIFNAKIGGP 352

Query: 220 ASAAHTDFFNKND 258
            S+      N N+
Sbjct: 353 VSSKPARPLNLNN 365


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
 Frame = +1

Query: 70  GKVNLFHNNDHDLSAKAFATRNMPT----------ISHLPSTNTVGGGLEYMFKDKIGAS 219
           G+ +  H+N+H++  K +++   PT          +  +P+T+TVG     +F  KIG  
Sbjct: 295 GRTSQNHSNEHEM--KEYSSYKSPTKQLVHSIHKSLQCIPATSTVGDANIDIFNAKIGGP 352

Query: 220 ASAAHTDFFNKND 258
            S+      N N+
Sbjct: 353 VSSKPARPLNLNN 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,962
Number of Sequences: 27780
Number of extensions: 222962
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)