Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_F18
(170 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 1.8
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 24 2.3
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 23 4.1
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 23 5.4
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 23 5.4
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 23 7.1
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 23 7.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 23 7.1
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 23 7.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 22 9.4
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 22 9.4
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 69 EAEAYRLQTIAEGKRTQTVEAAKADAERIQVL 164
EAE RL+ E ++ + +E K + ERI+++
Sbjct: 124 EAERQRLKDEEERRKKELMEKEKKEKERIRLI 155
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 122 CLSPFSLSDGLEAVSLCLSGQSDCRYQFFFT 30
CL+P DG+ ++ ++G S Y F T
Sbjct: 387 CLNPLEGLDGISSILQLMNGLSISSYMFAIT 417
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 84 GKPLPQRAVGLSLSILLHDAE 22
G+P + ++ L+ S+L HDA+
Sbjct: 539 GEPFAEESLSLAKSLLQHDAQ 559
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 42 LIATVRLPAEAEAYRLQTIAEGKRTQTVEAAKADA 146
L+ VR R QT+ +R VEAA+ +A
Sbjct: 308 LLDDVRKDTRENVVRRQTLTAAERLAEVEAAEREA 342
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 125 YCLSPFSLSDGLEAVSLC 72
Y S FSL DG +A +C
Sbjct: 386 YVKSDFSLEDGTDAALIC 403
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -1
Query: 170 QTQYLDTFCVGFSRLYCLSPFSLSDGLEAVSLCL 69
+ Q++ T CV YC++ D L CL
Sbjct: 444 ENQHIFTACVEIYLSYCITQLYFYDPLTNYETCL 477
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 93 SGGGKPLPQRAVGLSLSI 40
+ GGKPLP++ + L +++
Sbjct: 357 ANGGKPLPEQRLPLMMAV 374
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 110 FSLSDGLEAVSLCLSGQSD 54
FSLS + LC+SG +D
Sbjct: 580 FSLSPSTRGIILCISGFTD 598
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 146 CVGFSRLYCLSPF 108
C G+S YCLS F
Sbjct: 132 CQGYSSFYCLSIF 144
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 140 GFSRLYCLSPFSLSDGLEAVSLCLSGQSDCRYQFF 36
G+ LY P +L + + VS+C C+ +FF
Sbjct: 185 GYPALYNGLPATLLNVVPYVSICFFTFEFCKQKFF 219
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 110 FSLSDGLEAVSLCL 69
F LSD +E VSLC+
Sbjct: 231 FPLSDAVEFVSLCV 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,560
Number of Sequences: 5004
Number of extensions: 6755
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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