Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F18
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664...    33   0.043
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363...    30   0.30 
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847...    27   2.1  
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350...    25   6.6  
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551...    25   8.7  
02_05_0548 + 29896648-29896701,29896818-29897021,29897451-298977...    25   8.7  

>04_03_1034 -
           21865633-21865811,21865838-21865860,21866345-21866433,
           21872484-21872894,21872968-21873284,21873389-21873467,
           21873539-21873903,21874484-21874656,21874824-21874913,
           21875797-21875862,21876615-21876661
          Length = 612

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 149 FCVGFSRLYCLSPFSLSD 96
           FC+ + R+ CLSPFSLSD
Sbjct: 317 FCMTYGRILCLSPFSLSD 334


>01_01_0492 -
           3632812-3633189,3633563-3633709,3633906-3633995,
           3634278-3634331,3636434-3636598,3637252-3637488,
           3637610-3637696,3637846-3638022
          Length = 444

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 117 ESVFPQRWSGGGKPLPQRAV 58
           E+VFPQ W+ GG+  P++ V
Sbjct: 108 EAVFPQAWTDGGESCPEKTV 127


>02_04_0228 -
           21083917-21084067,21084489-21084577,21084662-21084731,
           21084747-21084823,21084954-21085337,21085420-21085760,
           21085869-21085950,21086033-21086391,21087084-21087204,
           21087427-21087512,21088896-21088944,21089262-21089275,
           21089467-21089545
          Length = 633

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 149 FCVGFSRLYCLSPFSLSD 96
           FC+ F R+  LSPFSL D
Sbjct: 316 FCLSFGRVLNLSPFSLVD 333


>11_04_0281 +
           15733505-15733647,15734366-15734443,15734835-15735077,
           15735868-15736012,15736234-15736293,15736376-15736471,
           15736651-15737067,15737824-15737964,15738043-15738213,
           15738394-15738651,15738741-15738889,15739060-15739557,
           15740147-15740420,15740631-15740696,15740891-15741057,
           15741413-15741497,15741673-15741732
          Length = 1016

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 96  WSGGGKPLPQRAVGLSLS 43
           W GGG  LP++A+   LS
Sbjct: 155 WYGGGPTLPRKAINTGLS 172


>02_05_1269 +
           35352825-35352888,35353645-35353968,35355062-35355183,
           35355361-35355482,35355651-35355755,35356402-35356765,
           35357181-35357321,35357619-35359109
          Length = 910

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 69  EAEAYRLQTIAEGKRTQTVEAAKADAERI 155
           EAE  R +   E +R Q VE   ADA RI
Sbjct: 386 EAENLRHEAYEETRRRQKVERDLADATRI 414


>02_05_0548 +
           29896648-29896701,29896818-29897021,29897451-29897708,
           29897821-29898036,29898130-29898285,29898396-29898707,
           29898795-29898882,29899055-29899203,29899390-29899722
          Length = 589

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 67  LRQRLTASRPSLRENGLKQ*RRLKPTQNV 153
           ++++LTA  P+L + G K+  R+K   N+
Sbjct: 94  IKEQLTAIAPTLEQLGKKKKERIKELANI 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,928,127
Number of Sequences: 37544
Number of extensions: 54633
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)