Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F18
         (170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    28   0.77 
AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z93389-10|CAB07674.1|  417|Caenorhabditis elegans Hypothetical p...    27   1.3  
Z93379-11|CAB07595.1|  417|Caenorhabditis elegans Hypothetical p...    27   1.3  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    26   3.1  
U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat debr...    25   7.2  
AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat debran...    25   7.2  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    25   9.5  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    25   9.5  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    25   9.5  
AF288374-1|AAK83056.1|  502|Caenorhabditis elegans nicotinic ace...    25   9.5  
AC006708-21|AAF60421.3|  502|Caenorhabditis elegans Uncoordinate...    25   9.5  

>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = +3

Query: 42  LIATVRLPAEAEAYRLQTIAEGKRTQTVEAAKADAERIQVLGL 170
           LI  V L AEA    LQ I EG   QT    K   + I  LGL
Sbjct: 336 LIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGL 378


>AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical
           protein Y62E10A.4 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 149 FCVGFSRLYCLSPFSLSDGLEAVSLCL 69
           FCVGFS L   S +S +   E V +CL
Sbjct: 130 FCVGFSVLITYSGYSYASDSEIVLVCL 156


>Z93389-10|CAB07674.1|  417|Caenorhabditis elegans Hypothetical
           protein F21H7.10 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 170 QTQ-YLDTFCVGFSRLYCLSPFSLSDGLEAVSLCLSGQSD 54
           QT+ + D +C+ +  L     F  +DGLE V+L     +D
Sbjct: 62  QTEMHADQYCIAYKFLEATESFREADGLEPVTLATHATAD 101


>Z93379-11|CAB07595.1|  417|Caenorhabditis elegans Hypothetical
           protein F21H7.10 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 170 QTQ-YLDTFCVGFSRLYCLSPFSLSDGLEAVSLCLSGQSD 54
           QT+ + D +C+ +  L     F  +DGLE V+L     +D
Sbjct: 62  QTEMHADQYCIAYKFLEATESFREADGLEPVTLATHATAD 101


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 161 YLDTFCVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           ++DTF  GF     LS  S    +E VSL +S
Sbjct: 6   FIDTFYAGFEYSIALSLCSFEKKIETVSLTIS 37


>U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat
           debranching enzyme protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 126 LLFESVFPQRWSGGGKPLPQRAVGLSLSI 40
           + F ++ P + SG G+P P R + L   I
Sbjct: 277 IAFAALVPHKGSGSGRPQPTRFLSLDKPI 305


>AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat
           debranching enzyme relatedprotein 1 protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 126 LLFESVFPQRWSGGGKPLPQRAVGLSLSI 40
           + F ++ P + SG G+P P R + L   I
Sbjct: 277 IAFAALVPHKGSGSGRPQPTRFLSLDKPI 305


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           CVG S L  L  +  SD  E V+LC+S
Sbjct: 268 CVGISFLTILVFYLPSDSGEKVTLCIS 294


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           CVG S L  L  +  SD  E V+LC+S
Sbjct: 268 CVGISFLTILVFYLPSDSGEKVTLCIS 294


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           CVG S L  L  +  SD  E V+LC+S
Sbjct: 268 CVGISFLTILVFYLPSDSGEKVTLCIS 294


>AF288374-1|AAK83056.1|  502|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 502

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 143 VGFSRLYCLSPFSLSDGLEAVSLCLS 66
           VG S L  L  +  SDG E +SLC+S
Sbjct: 271 VGISFLTALVFYLPSDGGEKISLCIS 296


>AC006708-21|AAF60421.3|  502|Caenorhabditis elegans Uncoordinated
           protein 63 protein.
          Length = 502

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 143 VGFSRLYCLSPFSLSDGLEAVSLCLS 66
           VG S L  L  +  SDG E +SLC+S
Sbjct: 271 VGISFLTALVFYLPSDGGEKISLCIS 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,585
Number of Sequences: 27780
Number of extensions: 38956
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)